Basic Information
Locus ID:
TC10G1796
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 52524860 | 52526101 | + | TC10G1796 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.69 | 43,208.74 Da | 55.91 | 82.74 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 334 | 376 | 4.81625E-16 | - |
| Pfam | PF13639 | Ring finger domain | 333 | 376 | 6.7E-11 | IPR001841 |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 30 | 105 | 1.4E-8 | IPR025287 |
| SUPERFAMILY | SSF57850 | RING/U-box | 326 | 378 | 3.24E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 304 | 381 | 5.2E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 334 | 375 | 1.7E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 334 | 376 | 11.751628 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G28040.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_012488577.1 | putative RING-H2 finger protein ATL21A [Gossypium raimondii] | 0 |
| Q9C7E9 | RING-H2 finger protein ATL20 OS=Arabidopsis thaliana OX=3702 GN=ATL20 PE=2 SV=2 | 0 | |
| TrEMBL | A0A7J9BXE0 | RING-type domain-containing protein OS=Gossypium gossypioides OX=34282 GN=Gogos_014038 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology