Basic Information
Locus ID:
TC10G1648
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 46974655 | 46991276 | + | TC10G1648 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.21 | 36,640.63 Da | 39.64 | 86.94 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 68 | 119 | 2.02102E-21 | - |
| Pfam | PF12906 | RING-variant domain | 68 | 118 | 3.7E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 65 | 123 | 1.36E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 55 | 132 | 7.9E-18 | IPR013083 |
| SMART | SM00744 | ringv_2 | 67 | 119 | 3.5E-17 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 60 | 125 | 20.967432 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 46 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 26 | 41 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11020.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_010688092.1 | uncharacterized protein LOC104902110 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A7C8Z8C0 | RING-CH-type domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology