Basic Information
Locus ID:
TC10G1459
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 40299737 | 40301422 | - | TC10G1459 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.49 | 63,702.53 Da | 62.22 | 67.95 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 150 | 193 | 7.79144E-20 | - |
| Pfam | PF13639 | Ring finger domain | 150 | 193 | 7.6E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 130 | 199 | 8.01E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 125 | 201 | 1.1E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 151 | 192 | 3.1E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 151 | 193 | 12.607302 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 485 | 515 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 289 | 313 | - | - |
| Coils | Coil | Coil | 232 | 252 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28890.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_022751716.1 | E3 ubiquitin-protein ligase ATL42-like isoform X1 [Durio zibethinus] | 0 |
| Q5XF85 | E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana OX=3702 GN=ATL42 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6P5ZH95 | E3 ubiquitin-protein ligase ATL42-like isoform X1 OS=Durio zibethinus OX=66656 GN=LOC111300346 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology