Basic Information
Locus ID:
TC10G1281
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 34790134 | 34798919 | + | TC10G1281 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.60 | 124,912.28 Da | 38.62 | 80.48 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 924 | 956 | 0.016 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 463 | 497 | 0.0026 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 502 | 540 | 0.1 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 358 | 962 | 8.63E-43 | IPR011047 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 983 | 1099 | 8.24E-6 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 779 | 1109 | 4.9E-28 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 556 | 704 | 6.5E-11 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 323 | 555 | 1.0E-28 | IPR015943 |
| SMART | SM00320 | WD40_4 | 836 | 872 | 22.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1009 | 1049 | 230.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 500 | 541 | 0.0063 | IPR001680 |
| SMART | SM00320 | WD40_4 | 875 | 915 | 2.8 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 3.6E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 546 | 587 | 20.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 410 | 450 | 45.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 456 | 497 | 2.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 590 | 630 | 6.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 918 | 957 | 1.1E-4 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 4.2E-14 | IPR006595 |
| SMART | SM00320 | WD40_4 | 350 | 389 | 0.84 | IPR001680 |
| SMART | SM00320 | WD40_4 | 633 | 674 | 180.0 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.22414 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 925 | 959 | 11.544415 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 925 | 959 | 9.651964 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.518368 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 608 | 639 | 8.971213 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 463 | 506 | 10.809215 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 484 | 498 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1115 | 1135 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1110 | 1135 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15880.1 | WUS-interacting protein 2. | 0 |
| RefSeq | XP_028189271.1 | topless-related protein 4-like isoform X1 [Glycine soja] | 0 |
| Q27GK7 | Topless-related protein 4 OS=Arabidopsis thaliana OX=3702 GN=TPR4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8K0HJQ5 | Topless-related protein 4-like OS=Rhamnella rubrinervis OX=2594499 GN=FNV43_RR04172 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology