Basic Information
Locus ID:
TC10G1195
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Short Name:
NTMC2T2.1
Description:
Synaptotagmin-5-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 32113028 | 32123731 | - | TC10G1195 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.03 | 63,416.82 Da | 25.69 | 105.65 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 443 | 539 | 4.92299E-27 | - |
| CDD | cd00030 | C2 | 264 | 366 | 8.98285E-25 | - |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 70 | 248 | 3.0E-15 | IPR039010 |
| Pfam | PF00168 | C2 domain | 262 | 366 | 2.6E-22 | IPR000008 |
| Pfam | PF00168 | C2 domain | 441 | 541 | 2.3E-24 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 260 | 392 | 1.57E-28 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 437 | 560 | 9.25E-32 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 431 | 560 | 8.4E-34 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 255 | 390 | 1.6E-31 | IPR035892 |
| SMART | SM00239 | C2_3c | 442 | 540 | 1.9E-24 | IPR000008 |
| SMART | SM00239 | C2_3c | 263 | 363 | 2.7E-21 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 243 | 364 | 19.732023 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 424 | 541 | 21.329905 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 67 | 249 | 29.587015 | IPR031468 |
| PRINTS | PR00360 | C2 domain signature | 484 | 497 | 1.1E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 458 | 470 | 1.1E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 506 | 514 | 1.1E-5 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_021861099.1 | synaptotagmin-5-like [Spinacia oleracea] | 0 |
| Q8L706 | Synaptotagmin-5 OS=Arabidopsis thaliana OX=3702 GN=SYT5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QXK9 | Synaptotagmin-5-like OS=Spinacia oleracea OX=3562 GN=SOVF_135070 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology