Basic Information
Locus ID:
TC10G1090
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 29449912 | 29458661 | - | TC10G1090 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.42 | 53,797.47 Da | 60.22 | 67.04 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 441 | 484 | 8.41134E-19 | - |
| Pfam | PF13639 | Ring finger domain | 440 | 484 | 1.9E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 420 | 489 | 4.08E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 405 | 489 | 8.1E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 442 | 483 | 5.7E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 442 | 484 | 12.208971 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 58 | 83 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 89 | 107 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 182 | 202 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 88 | 107 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 158 | 202 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G45290.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021850572.1 | uncharacterized protein LOC110790119 [Spinacia oleracea] | 0 |
| Q69U49 | Receptor homology region, transmembrane domain- and RING domain-containing protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=RMR1 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9RE36 | RING-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_077150 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg31588 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_10568 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014177 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g192650 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25438, Sbi_jg9282 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19312 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011100 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl41851, Sgl46652 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009845, gene:ENSEOMG00000033288 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0023360, CQ.Regalona.r1.8BG0019020 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30179730, pistato.v30266840 |
| Apiaceae | Apium graveolens | 2 | Ag10G01530, Ag10G01894 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G005660 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103703668, gene-LOC120103728 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.813.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G08313 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2489 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2626 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g09590 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.115 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00001015, Pov_00016981 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb6G31997, Lb7G35341 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.3800, BH07.3622, CH07.3697 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0149190, gene-QOZ80_2BG0205080 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0625100.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_026254 |
| Poaceae | Oryza coarctata | 2 | Oco03G024390, Oco04G024850 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g34190.1, LOC_Os02g55520.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G307500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0206247, Pt_Chr0602172 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr06G000410, Chr09G017520, Chr0G032750, Chr13G001700 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G643800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG054150, gene_TRIDC6BG063220 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G362000.1, TraesCS6B02G395600.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb192250_P002, Zm00001eb257960_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-39909 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g17339 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g23880 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_10_RagTag.112, evm.TU.Scaffold_11_RagTag.45 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-25242, nbisL1-mrna-7142 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-19609, nbisL1-mrna-4323 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-14515, nbisL1-mrna-4983 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000005l.354, evm.TU.utg000008l.1311 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000088, Maker00010264 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-1872, nbisL1-mrna-233 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-22086, nbisL1-mrna-22267 |
| Salicaceae | Populus euphratica | 3 | populus_peu05659, populus_peu12289, populus_peu31850 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132603076, gene-LOC132645841 |
| Solanaceae | Solanum chilense | 2 | SOLCI001873600, SOLCI004796900 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107008316, gene-LOC107024373 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_9038 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1090 |
| Zosteraceae | Zostera marina | 1 | Zosma01g04150.v3.1 |