Basic Information
Locus ID:
TC10G1035
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 28060338 | 28084322 | + | TC10G1035 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.62 | 46,045.07 Da | 42.27 | 101.52 | 0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 123 | 323 | 4.61437E-102 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 138 | 302 | 2.7E-17 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 113 | 314 | 1.01E-40 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 268 | 414 | 2.4E-17 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 324 | 414 | 3.7E-22 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 95 | 323 | 5.4E-85 | IPR027417 |
| SMART | SM00487 | ultradead3 | 130 | 332 | 2.4E-31 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 123 | 414 | 8.2E-107 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 142 | 316 | 24.171604 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 347 | 414 | 9.244162 | IPR001650 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35740.1 | DEAD/DEAH box RNA helicase family protein . Encodes RECQ3, an ATP-dependent helicase. | 0 |
| RefSeq | XP_048490996.1 | ATP-dependent DNA helicase Q-like 3 isoform X4 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9FT72 | ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana OX=3702 GN=RECQL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0J8B3Q8 | Helicase ATP-binding domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_004930 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology