Basic Information
Locus ID:
TC10G0975
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
Oligouridylate-binding protein 1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 26569850 | 26576119 | - | TC10G0975 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.80 | 45,997.95 Da | 47.60 | 67.11 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12354 | RRM3_TIA1_like | 259 | 333 | 2.48534E-32 | - |
| CDD | cd12619 | RRM2_PUB1 | 140 | 214 | 6.56494E-51 | - |
| CDD | cd12352 | RRM1_TIA1_like | 56 | 126 | 1.24749E-36 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 56 | 122 | 7.1E-14 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 261 | 327 | 1.3E-13 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 141 | 211 | 1.4E-16 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 53 | 218 | 2.45E-45 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 245 | 337 | 4.7E-23 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 138 | 6.6E-26 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 139 | 221 | 3.1E-24 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 237 | 337 | 3.1E-24 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 55 | 124 | 1.2E-18 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 260 | 329 | 2.7E-18 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 140 | 213 | 1.3E-22 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 260 | 329 | 0.57 | IPR003954 |
| SMART | SM00361 | rrm2_1 | 140 | 213 | 0.18 | IPR003954 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 139 | 217 | 17.045906 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 259 | 333 | 15.920249 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 54 | 128 | 16.517189 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 217 | 255 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 220 | 255 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14100.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_020423466.1 | oligouridylate-binding protein 1 isoform X2 [Prunus persica] | 0 |
| Q9M427 | Oligouridylate-binding protein 1 OS=Nicotiana plumbaginifolia OX=4092 GN=UBP1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5E4E654 | Oligouridylate-binding protein 1-like OS=Prunus dulcis OX=3755 GN=ALMOND_2B005533 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology