Basic Information
Locus ID:
TC10G0867
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 23923365 | 23928931 | + | TC10G0867 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.56 | 167,147.11 Da | 38.73 | 105.21 | 0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03244 | ABCC_MRP_domain2 | 1254 | 1474 | 4.32862E-123 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 317 | 604 | 6.91337E-103 | IPR044746 |
| CDD | cd03250 | ABCC_MRP_domain1 | 630 | 830 | 5.88768E-110 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 937 | 1231 | 3.08866E-85 | IPR044726 |
| Pfam | PF00005 | ABC transporter | 1273 | 1421 | 8.7E-31 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 319 | 583 | 5.5E-23 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 940 | 1180 | 3.3E-29 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 648 | 782 | 3.9E-18 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 627 | 852 | 3.97E-56 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1248 | 1485 | 2.47E-66 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 311 | 614 | 6.02E-31 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 939 | 1238 | 2.88E-50 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 618 | 870 | 1.0E-72 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 306 | 611 | 1.1E-46 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1239 | 1492 | 1.5E-79 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 902 | 1237 | 5.0E-57 | IPR036640 |
| SMART | SM00382 | AAA_5 | 657 | 830 | 3.3E-13 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1282 | 1467 | 2.0E-11 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1256 | 1490 | 19.201138 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 939 | 1219 | 35.059917 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 316 | 596 | 33.540695 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 630 | 853 | 21.742142 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 755 | 769 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 866 | 913 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 866 | 880 | - | - |
| Coils | Coil | Coil | 477 | 497 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_028088748.1 | ABC transporter C family member 3-like [Camellia sinensis] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5C7IEY6 | ABC-type xenobiotic transporter OS=Acer yangbiense OX=1000413 GN=EZV62_008956 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology