Basic Information
Locus ID:
TC10G0780
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 21242771 | 21249945 | - | TC10G0780 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.67 | 73,438.64 Da | 35.64 | 89.24 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00651 | BTB/POZ domain | 65 | 154 | 8.2E-5 | IPR000210 |
| Pfam | PF03000 | NPH3 family | 248 | 501 | 2.0E-89 | IPR027356 |
| SUPERFAMILY | SSF54695 | POZ domain | 52 | 154 | 4.94E-17 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 44 | 157 | 1.6E-11 | IPR011333 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 248 | 525 | 86.987358 | IPR027356 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 66 | 134 | 9.371991 | IPR000210 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 624 | 660 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G14820.1 | Phototropic-responsive NPH3 family protein. A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis. | 0 |
| RefSeq | XP_002264153.1 | PREDICTED: BTB/POZ domain-containing protein NPY2 [Vitis vinifera] | 0 |
| O80970 | Phototropic-responsive NPH3 family protein NPY2 OS=Arabidopsis thaliana OX=3702 GN=NPY2 PE=2 SV=1 | 0 | |
| TrEMBL | A5AMP7 | NPH3 domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_035422 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology