Basic Information
Locus ID:
TC10G0458
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 12514052 | 12522710 | + | TC10G0458 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.90 | 96,629.98 Da | 42.47 | 70.58 | -0.88 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01728 | FtsJ-like methyltransferase | 22 | 200 | 3.7E-52 | IPR002877 |
| Pfam | PF11861 | Domain of unknown function (DUF3381) | 236 | 401 | 1.0E-41 | IPR024576 |
| Pfam | PF07780 | Spb1 C-terminal domain | 629 | 826 | 5.2E-60 | IPR012920 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 21 | 201 | 9.91E-31 | IPR029063 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 19 | 207 | 3.4E-58 | - |
| Hamap | MF_03163 | AdoMet-dependent rRNA methyltransferase <gene_name> [SPB1]. | 1 | 832 | 20.004356 | IPR028589 |
| Hamap | MF_01547 | Ribosomal RNA large subunit methyltransferase E [rlmE]. | 6 | 202 | 28.475475 | IPR015507 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 349 | 371 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 342 | 372 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 784 | 857 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 596 | 614 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 437 | 479 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 523 | 538 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 616 | 637 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 576 | 590 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 491 | 522 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 491 | 541 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 835 | 857 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 638 | 660 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 453 | 479 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 569 | 661 | - | - |
| Coils | Coil | Coil | 736 | 759 | - | - |
| Coils | Coil | Coil | 496 | 526 | - | - |
| Coils | Coil | Coil | 359 | 393 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25730.1 | FtsJ-like methyltransferase family protein. | 0 |
| RefSeq | XP_030523133.1 | pre-rRNA 2'-O-ribose RNA methyltransferase [Rhodamnia argentea] | 0 |
| Q54NX0 | pre-rRNA 2'-O-ribose RNA methyltransferase OS=Dictyostelium discoideum OX=44689 GN=fsjC PE=3 SV=1 | 0 | |
| TrEMBL | A0A8B8NMB8 | Putative rRNA methyltransferase OS=Rhodamnia argentea OX=178133 GN=LOC115735848 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg26204, jg40568 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_7747 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah028898 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg19526, Sbi_jg44087 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg17885 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00014542 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl41813, Sgl46611, Sgl51098, Sgl56406 |
| Amaranthaceae | Chenopodium album | 8 | gene:ENSEOMG00000017896, gene:ENSEOMG00000019354 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.2AG0010210, CQ.Regalona.r1.2BG0010940 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30114880, pistato.v30121440 |
| Apiaceae | Apium graveolens | 1 | Ag6G02571 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G007140 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103720214 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.1083.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri8G08930 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G25730.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024417m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g23760.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g082090.2N, BniB05g055680.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0160 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G0194 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno15g05350 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0355s00010.v1.0, Dusal.0355s00011.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate06g10450, gene.Thate08g10880 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-9629 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.153 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005791 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb3G16704, Lb3G16705, Lb3G17267 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.1364, BH05.1536, CH05.1738 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0362790, gene-QOZ80_5BG0410950 |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.1HG0079400.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 9 | gene-QYE76_007213, gene-QYE76_007214, gene-QYE76_007217 ... |
| Poaceae | Oryza coarctata | 2 | Oco09G017000, Oco10G016910 |
| Poaceae | Oryza sativa | 3 | LOC_Os05g49230.1, LOC_Os09g27270.1, LOC_Os10g42404.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G238900 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0502978, Pt_Chr0505637, Pt_Chr0700738 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G015760, Chr12G020970, Chr18G016750, Chr22G001030 |
| Poaceae | Thinopyrum elongatum | 6 | Tel1E01G597500, Tel1E01G597800, Tel1E01G597900 ... |
| Poaceae | Triticum dicoccoides | 7 | gene_TRIDC1AG053970, gene_TRIDC1AG059670 ... |
| Poaceae | Triticum aestivum | 8 | TraesCS1A02G404700.1, TraesCS1B02G434500.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb296160_P001, Zm00001eb343980_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-13631 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g27400 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.2508, evm.TU.LG08.176 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g13900, gene.Posoc07g09810 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.2259 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14085 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-3293 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000016l.105 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00016388 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4664 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22404 |
| Salicaceae | Populus euphratica | 1 | populus_peu36497 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132626953 |
| Solanaceae | Solanum chilense | 1 | SOLCI003696800 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107002312, gene-LOC107002354, gene-LOC107004744 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_7833 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G0458 |
| Zosteraceae | Zostera marina | 2 | Zosma04g24150.v3.1, Zosma04g24180.v3.1 |