Basic Information
Locus ID:
TC10G0430
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
Chromatin structure-remodeling complex subunit RSC1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 11923332 | 11944770 | - | TC10G0430 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.50 | 25,503.47 Da | 58.64 | 56.67 | -0.76 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01426 | BAH domain | 30 | 142 | 1.0E-21 | IPR001025 |
| Pfam | PF00628 | PHD-finger | 147 | 194 | 4.6E-10 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 137 | 196 | 2.66E-18 | IPR011011 |
| Gene3D | G3DSA:2.30.30.490 | - | 4 | 141 | 2.1E-30 | IPR043151 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 142 | 208 | 5.5E-19 | IPR013083 |
| SMART | SM00249 | PHD_3 | 147 | 194 | 7.1E-8 | IPR001965 |
| SMART | SM00439 | BAH_4 | 28 | 143 | 9.2E-42 | IPR001025 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 28 | 143 | 24.009418 | IPR001025 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 145 | 196 | 8.9293 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 148 | 193 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 197 | 222 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22140.2 | PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein. | 0 |
| RefSeq | XP_034681994.1 | chromatin remodeling protein EBS-like isoform X1 [Vitis riparia] | 0 |
| F4JL28 | Chromatin remodeling protein EBS OS=Arabidopsis thaliana OX=3702 GN=EBS PE=1 SV=1 | 0 | |
| TrEMBL | A0A0B0PGI0 | BAH and coiled-coil domain-containing 1 OS=Gossypium arboreum OX=29729 GN=LOC108475471 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology