Basic Information
Locus ID:
TC10G0136
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
WD-40 repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 3737062 | 3739207 | - | TC10G0136 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.48 | 45,370.90 Da | 38.10 | 78.98 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 345 | 380 | 0.019 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 243 | 280 | 0.041 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 155 | 188 | 0.23 | IPR001680 |
| Pfam | PF12265 | Histone-binding protein RBBP4 or subunit C of CAF1 complex | 16 | 86 | 1.4E-21 | IPR022052 |
| Pfam | PF00400 | WD domain, G-beta repeat | 286 | 324 | 2.1E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 201 | 237 | 5.0E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 98 | 383 | 1.47E-47 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 400 | 5.0E-124 | IPR015943 |
| SMART | SM00320 | WD40_4 | 148 | 188 | 1.9E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 197 | 237 | 2.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 284 | 324 | 6.5E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 240 | 280 | 0.0043 | IPR001680 |
| SMART | SM00320 | WD40_4 | 341 | 381 | 8.5E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 204 | 246 | 12.379869 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 155 | 191 | 9.441055 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 155 | 197 | 11.510997 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 348 | 382 | 8.937796 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 291 | 326 | 13.014815 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 204 | 240 | 9.572873 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 291 | 326 | 10.811958 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 311 | 325 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 175 | 189 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 175 | 189 | 1.2E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 267 | 281 | 1.2E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 311 | 325 | 1.2E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G16780.1 | Transducin family protein / WD-40 repeat family protein. Encodes a WD-40 repeat protein similar to yeast MSI1. | 0 |
| RefSeq | XP_004289874.1 | PREDICTED: WD-40 repeat-containing protein MSI3-like [Fragaria vesca subsp. vesca] | 0 |
| O22468 | WD-40 repeat-containing protein MSI2 OS=Arabidopsis thaliana OX=3702 GN=MSI2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6N2C5P1 | CAF1C_H4-bd domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_022920 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology