Basic Information
Locus ID:
TC09G2512
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Short Name:
UBP16
Description:
MYND finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 91924999 | 91932354 | - | TC09G2512 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.88 | 130,735.10 Da | 45.75 | 68.83 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 648 | 951 | 1.3E-42 | IPR001394 |
| Pfam | PF01753 | MYND finger | 96 | 133 | 1.4E-9 | IPR002893 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 92 | 135 | 9.24E-11 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 647 | 953 | 4.32E-80 | IPR038765 |
| Gene3D | G3DSA:6.10.140.2220 | - | 80 | 137 | 2.2E-12 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 641 | 965 | 2.2E-86 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 96 | 133 | 12.086625 | IPR002893 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 648 | 954 | 48.099987 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 649 | 664 | - | IPR018200 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 96 | 133 | - | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1025 | 1058 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1109 | 1200 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1109 | 1140 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1026 | 1052 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 969 | 999 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1154 | 1174 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24560.1 | ubiquitin-specific protease 16. Encodes a ubiquitin-specific protease. There is no evidence for a phenotype in ubp16-1 mutants, however, double mutant analysis with ubp15 mutants reveals a role for UBP16 in plant development and cell proliferation. | 0 |
| RefSeq | XP_021743660.1 | ubiquitin carboxyl-terminal hydrolase 16-like [Chenopodium quinoa] | 0 |
| Q9SB51 | Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana OX=3702 GN=UBP16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5B7AG99 | Putative ubiquitin carboxyl-terminal hydrolase 16 isoform X2 OS=Davidia involucrata OX=16924 GN=Din_025223 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology