Basic Information
Locus ID:
TC09G2496
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
E3 ubiquitin-protein ligase RING1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 91639741 | 91641467 | + | TC09G2496 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.98 | 39,329.24 Da | 70.90 | 72.82 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 240 | 282 | 3.00418E-22 | - |
| Pfam | PF13639 | Ring finger domain | 240 | 282 | 5.4E-13 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 20 | 52 | 1.1E-11 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 220 | 288 | 2.5E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 202 | 288 | 3.0E-23 | IPR013083 |
| SMART | SM00184 | ring_2 | 241 | 281 | 7.3E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 241 | 282 | 12.282736 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G60360.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_050251318.1 | E3 ubiquitin-protein ligase RZF1 [Quercus robur] | 0 |
| Q8LPN7 | E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6RF19 | RING-type E3 ubiquitin transferase OS=Carpinus fangiana OX=176857 GN=FH972_015994 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology