Basic Information
Locus ID:
TC09G2444
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
Receptor homology region, transmembrane domain- and RING domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 90285598 | 90290762 | - | TC09G2444 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.63 | 51,067.18 Da | 65.86 | 78.18 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02123 | PA_C_RZF_like | 35 | 174 | 8.70469E-46 | IPR044744 |
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 243 | 286 | 2.74268E-22 | - |
| Pfam | PF02225 | PA domain | 73 | 153 | 9.8E-10 | IPR003137 |
| Pfam | PF13639 | Ring finger domain | 243 | 286 | 4.8E-12 | IPR001841 |
| SUPERFAMILY | SSF52025 | PA domain | 86 | 154 | 1.11E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 224 | 301 | 8.25E-20 | - |
| Gene3D | G3DSA:3.50.30.30 | - | 26 | 164 | 1.8E-28 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 205 | 291 | 1.5E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 244 | 285 | 2.4E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 244 | 286 | 12.25323 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71980.1 | Protease-associated (PA) RING/U-box zinc finger family protein. | 0 |
| RefSeq | XP_012075161.1 | receptor homology region, transmembrane domain- and RING domain-containing protein 2 isoform X2 [Jatropha curcas] | 0 |
| Q8VZ14 | Receptor homology region, transmembrane domain- and RING domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=RMR2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9ATK9 | RING-type domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology