Basic Information
Locus ID:
TC09G2299
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Short Name:
GBF3
Description:
Common plant regulatory factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 84896876 | 84899779 | + | TC09G2299 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.15 | 45,323.91 Da | 49.30 | 61.45 | -0.73 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14702 | bZIP_plant_GBF1 | 290 | 338 | 4.26503E-17 | - |
| Pfam | PF16596 | Disordered region downstream of MFMR | 137 | 270 | 3.6E-17 | - |
| Pfam | PF00170 | bZIP transcription factor | 285 | 347 | 7.8E-17 | IPR004827 |
| Pfam | PF07777 | G-box binding protein MFMR | 1 | 97 | 6.7E-27 | IPR012900 |
| SUPERFAMILY | SSF57959 | Leucine zipper domain | 288 | 344 | 5.06E-8 | - |
| Gene3D | G3DSA:1.20.5.170 | - | 288 | 341 | 4.7E-8 | - |
| SMART | SM00338 | brlzneu | 285 | 349 | 3.1E-15 | IPR004827 |
| ProSiteProfiles | PS50217 | Basic-leucine zipper (bZIP) domain profile. | 287 | 350 | 11.978279 | IPR004827 |
| ProSitePatterns | PS00036 | Basic-leucine zipper (bZIP) domain signature. | 292 | 307 | - | IPR004827 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 264 | 279 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 263 | 314 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 382 | 406 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 157 | 186 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 157 | 227 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 382 | 402 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 200 | 226 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 282 | 314 | - | - |
| Coils | Coil | Coil | 333 | 360 | - | - |
| Coils | Coil | Coil | 305 | 325 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G46270.1 | G-box binding factor 3. encodes a bZIP G-box binding protein whose expression is induced by ABA. It has been shown to bind to Adh that contains the G-box and is induced by cold and water deprivation. GBF3 has been shown to be expressed mostly in the root and dark-grown leaves. GBF3 can act as homodimers and as heterodimers with GFB1, GBF2 and GBF4. In addition, GBF3s DNA binding activity is enhanced by GIP1, GPRI1 and GPRI2. | 0 |
| RefSeq | XP_002279966.2 | PREDICTED: common plant regulatory factor 1 isoform X1 [Vitis vinifera] | 0 |
| Q99089 | Common plant regulatory factor 1 OS=Petroselinum crispum OX=4043 GN=CPRF1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C8ZB59 | BZIP domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg1985, jg26904, jg29419 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_16185, gene_1660 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah018732, Ah022901 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_1g003640, BVRB_3g052640 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg4011, Sbi_jg49218, Sbi_jg7055 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg6022 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00000535, GOSA_00019996, GOSA_00019997 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl01433, Sgl06586, Sgl06595, Sgl10978, Sgl16377, Sgl16387 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000004036, gene:ENSEOMG00000013809 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1AG0001680, CQ.Regalona.r1.2BG0025750 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30005350 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G003190 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103708357, gene-LOC103713486 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2715.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri11G27223, Ftri15G10252, Ftri3G21463 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G46270.1, AT4G01120.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10001533m.g.v1.0, Thhalv10028761m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp4g28320.v2.2, Sp6g00990.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB08g030070.2N, BniB08g043250.2N, BniS06172g090.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1222 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1262 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno16g02140 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g15270 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-9522 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.761 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00016637 |
| Plumbaginaceae | Limonium bicolor | 6 | Lb1G03600, Lb1G03603, Lb1G03604, Lb1G04255, Lb2G11198 ... |
| Poaceae | Echinochloa crus-galli | 6 | AH02.2598, AH05.1340, BH02.2699, BH05.1511, CH02.3838 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0027260, gene-QOZ80_1BG0077450 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0090320.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_054321 |
| Poaceae | Oryza coarctata | 4 | Oco01G016260, Oco02G016490, Oco09G017120, Oco10G017050 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g46970.1, LOC_Os05g49420.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G217700, gene-BS78_09G241200 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0205368, Pt_Chr0502952, Pt_Chr0505614, Pt_Chr0605010 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr01G015830, Chr02G013800, Chr12G020900, Chr18G016620 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G677600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG060340, gene_TRIDC1BG069090 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G409800.2, TraesCS1B02G439800.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb129290_P001, Zm00001eb157860_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-13620, nbis-gene-25970, nbis-gene-29027 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g27408, Zma_g8358 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG04.2205, evm.TU.LG06.101, evm.TU.LG06.1940 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g08450 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_9_RagTag.572, evm.TU.Scaffold_9_RagTag.573 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-10765, nbisL1-mrna-21690 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20741 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-7373 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.227 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017580 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1724 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-19582 |
| Salicaceae | Populus euphratica | 3 | populus_peu27605, populus_peu31597, populus_peu31598 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132640664, gene-LOC132645491 |
| Solanaceae | Solanum chilense | 2 | SOLCI003906400, SOLCI005152200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107022841 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.10919_chr07_-, gene_1386 |
| Tamaricaceae | Tamarix chinensis | 2 | TC03G2158, TC09G2299 |