Basic Information
Locus ID:
TC09G2217
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 82388867 | 82394995 | + | TC09G2217 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.47 | 98,870.75 Da | 55.30 | 82.86 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 809 | 850 | 2.19972E-21 | - |
| CDD | cd01989 | STK_N | 41 | 192 | 1.38203E-48 | - |
| Pfam | PF04564 | U-box domain | 805 | 876 | 3.5E-19 | IPR003613 |
| Pfam | PF00069 | Protein kinase domain | 521 | 774 | 2.2E-40 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 497 | 783 | 1.24E-65 | IPR011009 |
| SUPERFAMILY | SSF57850 | RING/U-box | 804 | 876 | 2.3E-24 | - |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 58 | 171 | 3.85E-7 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 40 | 189 | 1.0E-7 | IPR014729 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 503 | 590 | 3.8E-24 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 591 | 790 | 4.7E-47 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 804 | 878 | 5.1E-29 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 808 | 871 | 3.5E-29 | IPR003613 |
| SMART | SM00220 | serkin_6 | 518 | 781 | 1.5E-31 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 518 | 787 | 33.530807 | IPR000719 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 804 | 878 | 34.94228 | IPR003613 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 636 | 648 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 524 | 545 | - | IPR017441 |
| Coils | Coil | Coil | 343 | 385 | - | - |
| Coils | Coil | Coil | 392 | 426 | - | - |
| Coils | Coil | Coil | 434 | 489 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_007220262.2 | LOW QUALITY PROTEIN: U-box domain-containing protein 33 [Prunus persica] | 0 |
| Q8GUH1 | U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2 | 0 | |
| TrEMBL | A5AUS0 | RING-type E3 ubiquitin transferase OS=Vitis vinifera OX=29760 GN=VITISV_015820 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology