Basic Information
Locus ID:
TC09G2179
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Short Name:
PMM
Description:
Involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 81313689 | 81324221 | + | TC09G2179 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.49 | 40,769.83 Da | 55.56 | 80.92 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02585 | HAD_PMM | 129 | 353 | 4.8186E-129 | IPR005002 |
| Pfam | PF03332 | Eukaryotic phosphomannomutase | 139 | 354 | 1.6E-110 | IPR005002 |
| SUPERFAMILY | SSF56784 | HAD-like | 131 | 350 | 8.25E-54 | IPR036412 |
| Gene3D | G3DSA:3.40.50.1000 | - | 130 | 350 | 1.4E-103 | IPR023214 |
| Gene3D | G3DSA:3.30.1240.20 | - | 197 | 298 | 1.4E-103 | IPR043169 |
| TIGRFAM | TIGR01484 | HAD-SF-IIB: HAD hydrolase, family IIB | 133 | 332 | 3.3E-22 | IPR006379 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
ko00051 (Fructose and mannose metabolism)
map00051 (Fructose and mannose metabolism)
ko00520 (Amino sugar and nucleotide sugar metabolism)
map00520 (Amino sugar and nucleotide sugar metabolism)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45790.1 | phosphomannomutase. encodes a phosphomannomutase, involved in ascorbate biosynthesis | 0 |
| RefSeq | XP_034710027.1 | phosphomannomutase [Vitis riparia] | 0 |
| Q1W376 | Phosphomannomutase OS=Glycine max OX=3847 GN=PMM PE=1 SV=1 | 0 | |
| TrEMBL | D7UC38 | Phosphomannomutase OS=Vitis vinifera OX=29760 GN=VIT_15s0046g03520 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg26861, jg29650 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_23293 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah036085 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g170670 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg39971, Sbi_jg55301 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg14363 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00011108, GOSA_00014121, GOSA_00014122 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl41841, Sgl46641 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000018611, gene:ENSEOMG00000035043 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.1AG0021990 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30004080 |
| Apiaceae | Apium graveolens | 1 | Ag6G00164 |
| Arecaceae | Cocos nucifera | 1 | COCNU_09G007430 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103719400 |
| Asparagaceae | Asparagus officinalis | 4 | AsparagusV1_01.901.V1.1, AsparagusV1_06.1267.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G28088, Ftri3G17219 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G45790.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10001604m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g27860.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB01g001280.2N, BniB06g004180.2N, BniB08g029880.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G2764, Ceq05G0146 |
| Casuarinaceae | Casuarina glauca | 5 | Cgl03G2507, Cgl03G3001, Cgl03G3002, Cgl05G0150, Cgl05G1288 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g00660 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0091s00023.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g28220, gene.Thate03g09230 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-6128, nbisL1-mrna-9495 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.899 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00032050 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G11031 |
| Poaceae | Echinochloa crus-galli | 8 | AH09.2742, BH09.2987, CH02.1612, CH02.1620, CH04.1178 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0299070, gene-QOZ80_4BG0329750 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0213480.1, HORVU.MOREX.r3.4HG0395170.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_047618, gene-QYE76_047683 |
| Poaceae | Oryza coarctata | 2 | Oco07G019550, Oco08G018820 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g58580.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_06G008800, gene-BS78_06G287500 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0307088 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr01G010870, Chr12G026040, Chr23G000680, Chr25G000510 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G976000, Tel4E01G410700 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC2AG078810, gene_TRIDC2BG086970 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS2B02G599300.1, TraesCS2D02G593400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb065790_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-18035 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g20708 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG19.965, evm.TU.LG24.968 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g04790 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.293 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-10870 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-11137 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000003l.289, evm.TU.utg000006l.558 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00009354, Maker00013373 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9213 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7010 |
| Salicaceae | Populus euphratica | 2 | populus_peu27736, populus_peu27737 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132600003, gene-LOC132640627 |
| Solanaceae | Solanum chilense | 3 | SOLCI001068600, SOLCI001178800, SOLCI004055600 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107018662, gene-LOC107019957, gene-LOC107026845 |
| Tamaricaceae | Reaumuria soongarica | 3 | gene_1447, gene_15243, gene_15244 |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G2179 |
| Zosteraceae | Zostera marina | 1 | Zosma01g35290.v3.1 |