Basic Information
Locus ID:
TC09G2149
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 80405911 | 80410357 | - | TC09G2149 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.80 | 50,336.73 Da | 37.79 | 74.31 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 287 | 322 | 0.045 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 165 | 201 | 1.2E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 328 | 361 | 0.0083 | IPR001680 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 133 | 156 | 3.66E-7 | IPR036855 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 162 | 451 | 6.87E-43 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 157 | 250 | 3.1E-9 | IPR015943 |
| Gene3D | G3DSA:3.30.1370.210 | - | 28 | 156 | 9.2E-7 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 254 | 459 | 1.0E-28 | IPR015943 |
| SMART | SM00320 | WD40_4 | 162 | 201 | 2.1E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 412 | 449 | 68.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 365 | 409 | 67.0 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 28 | 51 | 0.053 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 132 | 157 | 7.5E-6 | IPR000571 |
| SMART | SM00320 | WD40_4 | 285 | 322 | 5.5E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 241 | 278 | 32.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 325 | 362 | 0.0076 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 169 | 210 | 13.68318 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 31 | 52 | 11.244012 | IPR000571 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 292 | 331 | 10.675542 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 131 | 158 | 13.319003 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 292 | 325 | 8.913786 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 169 | 201 | 11.101955 | - |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 309 | 323 | 2.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 349 | 363 | 2.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 188 | 202 | 2.3E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 58 | 92 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_052185440.1 | zinc finger CCCH domain-containing protein 48-like [Diospyros lotus] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A151U0R5 | Zinc finger CCCH domain-containing protein 48 OS=Cajanus cajan OX=3821 GN=KK1_005491 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology