Basic Information
Locus ID:
TC09G2148
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
Zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 80358626 | 80375586 | - | TC09G2148 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.42 | 50,090.16 Da | 38.84 | 71.29 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 326 | 361 | 8.5E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 286 | 321 | 0.15 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 164 | 200 | 3.3E-6 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 147 | 448 | 4.76E-40 | IPR036322 |
| Gene3D | G3DSA:3.30.1370.210 | - | 27 | 154 | 2.3E-5 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 155 | 249 | 4.1E-10 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 261 | 457 | 4.3E-29 | IPR015943 |
| SMART | SM00320 | WD40_4 | 161 | 200 | 1.2E-6 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 131 | 156 | 0.0074 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 27 | 50 | 0.068 | IPR000571 |
| SMART | SM00320 | WD40_4 | 324 | 361 | 4.5E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 411 | 448 | 81.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 364 | 408 | 33.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 284 | 321 | 6.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 240 | 277 | 20.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 291 | 330 | 11.778342 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 168 | 200 | 11.181047 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 168 | 209 | 13.816853 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 130 | 157 | 11.920027 | IPR000571 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 30 | 51 | 11.244012 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 291 | 324 | 8.834696 | - |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 348 | 362 | 1.9E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 187 | 201 | 1.9E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 308 | 322 | 1.9E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 55 | 111 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_021765944.1 | zinc finger CCCH domain-containing protein 48-like [Chenopodium quinoa] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A151U0R5 | Zinc finger CCCH domain-containing protein 48 OS=Cajanus cajan OX=3821 GN=KK1_005491 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology