Basic Information
Locus ID:
TC09G2144
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
Zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 80305820 | 80306376 | - | TC09G2144 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.56 | 14,980.15 Da | 48.26 | 82.16 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 2 | 36 | 9.2E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 2 | 126 | 1.96E-16 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 132 | 1.1E-15 | IPR015943 |
| SMART | SM00320 | WD40_4 | 1 | 37 | 1.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 87 | 124 | 61.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 40 | 84 | 65.0 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G51980.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_010545184.1 | PREDICTED: zinc finger CCCH domain-containing protein 48-like [Tarenaya hassleriana] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5B7C4B1 | WD_REPEATS_REGION domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_045138 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology