halophFGD

Basic Information

Locus ID: TC09G2044

Species & Taxonomic ID: Tamarix chinensis & 189791

Genome Assembly: GCA_030549775.1

Description: Necessary for protein translocation in the endoplasmic reticulum

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr9	76281164	76282728	-	TC09G2044

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
10.65	16,235.34 Da	65.18	86.88	-0.06

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF03911	Sec61beta family	107	146	8.4E-18	IPR016482
MobiDBLite	mobidb-lite	consensus disorder prediction	70	103	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	20	-	-

KEGG Pathway

KO Term:

K09481 (protein transport protein SEC61 subunit beta)

Pathway:

ko03060 (Protein export) map03060 (Protein export) ko04141 (Protein processing in endoplasmic reticulum) map04141 (Protein processing in endoplasmic reticulum) ko04145 (Phagosome) map04145 (Phagosome)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G60540.1	Preprotein translocase Sec, Sec61-beta subunit protein.
RefSeq	XP_006427859.1	protein transport protein Sec61 subunit beta [Citrus clementina]
Swiss-Prot	P38389	Protein transport protein Sec61 subunit beta OS=Arabidopsis thaliana OX=3702 GN=At2g45070 PE=1 SV=1
TrEMBL	A0A067EE65	Protein transport protein Sec61 subunit beta OS=Citrus sinensis OX=2711 GN=CISIN_1g034675mg PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg35865, jg8273
Aizoaceae	Mesembryanthemum crystallinum	1	gene_7188
Amaranthaceae	Salicornia bigelovii	1	Sbi_jg3466
Amaranthaceae	Salicornia europaea	1	Seu_jg6500
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00000220
Amaranthaceae	Suaeda glauca	2	Sgl11351, Sgl16736
Amaranthaceae	Chenopodium quinoa	1	CQ.Regalona.r1.1AG0007100
Apiaceae	Apium graveolens	5	Ag10G00569, Ag10G00587, Ag5G00900, Ag5G02889, Ag8G01647
Arecaceae	Cocos nucifera	4	COCNU_04G003010, COCNU_04G014200, COCNU_06G002110 ... COCNU_12G006780
Arecaceae	Phoenix dactylifera	4	gene-LOC103709701, gene-LOC103718128, gene-LOC120110167 ... gene-LOC120112903
Asteraceae	Flaveria trinervia	4	Ftri11G10025, Ftri15G30559, Ftri2G03569, Ftri5G08796
Brassicaceae	Arabidopsis thaliana	3	AT2G45070.1, AT3G60540.1, AT5G60460.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10001704m.g.v1.0, Thhalv10006343m.g.v1.0 ... Thhalv10015073m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp4g27130.v2.2, Sp5g02680.v2.2, Sp6g22050.v2.2
Brassicaceae	Brassica nigra	3	BniB06g003490.2N, BniB08g011790.2N, BniB08g029330.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq05G1115
Casuarinaceae	Casuarina glauca	2	Cgl05G1134, Cgl08G1778
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno02g19880, gene.Cymno03g00090, gene.Cymno05g01510
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG08.617
Plantaginaceae	Plantago ovata	2	Pov_00002646, Pov_00031508
Plumbaginaceae	Limonium bicolor	1	Lb2G10919
Poaceae	Echinochloa crus-galli	6	AH02.2057, AH04.18, AH05.95, AH06.2653, BH02.2111, CH04.24
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_1AG0021290, gene-QOZ80_1BG0071110 ... gene-QOZ80_5AG0378450, gene-QOZ80_5BG0425530, gene-QOZ80_9AG0671880, gene-QOZ80_9BG0695410
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.3HG0266020.1.CDS1 ... HORVU.MOREX.r3.4HG0355150.1.CDS1, HORVU.MOREX.r3.5HG0466190.1.CDS1
Poaceae	Lolium multiflorum	3	gene-QYE76_003787, gene-QYE76_053356, gene-QYE76_065257
Poaceae	Oryza coarctata	3	Oco01G012810, Oco02G012910, Oco23G002830
Poaceae	Oryza sativa	4	LOC_Os01g38510.1, LOC_Os11g01300.1, LOC_Os12g01260.1 ... LOC_Os12g07490.1
Poaceae	Paspalum vaginatum	4	gene-BS78_03G158500, gene-BS78_05G002100 ... gene-BS78_08G000800, gene-BS78_09G023500
Poaceae	Sporobolus alterniflorus	7	Chr02G017420, Chr03G009190, Chr05G016560, Chr08G009330 ... Chr16G007910, Chr17G007030, Chr27G004890
Poaceae	Thinopyrum elongatum	5	Tel3E01G359500, Tel4E01G209800, Tel5E01G034200 ... Tel5E01G034400, Tel5E01G268100
Poaceae	Triticum dicoccoides	7	gene_TRIDC3AG030480, gene_TRIDC3BG034700 ... gene_TRIDC4AG029400, gene_TRIDC4BG021050, gene_TRIDC5AG002380, gene_TRIDC5AG025800, gene_TRIDC5BG026920
Poaceae	Triticum aestivum	12	TraesCS3A02G207800.1.cds1, TraesCS3B02G234900.1.cds1 ... TraesCS3D02G208200.1.cds1, TraesCS4A02G183100.1.cds1, TraesCS4B02G135500.1.cds1, TraesCS4D02G130200.1.cds1, TraesCS5A02G015200.1.cds1, TraesCS5A02G155200.1.cds1, TraesCS5B02G013400.1.cds1, TraesCS5B02G153400.1.cds1, TraesCS5D02G021100.1.cds1, TraesCS5D02G160200.1.cds1
Poaceae	Zea mays	4	Zm00001eb159930_P001, Zm00001eb266430_P001 ... Zm00001eb355660_P001, Zm00001eb356920_P001
Poaceae	Zoysia japonica	2	nbis-gene-25855, nbis-gene-26941
Poaceae	Zoysia macrostachya	2	Zma_g18317, Zma_g24583
Posidoniaceae	Posidonia oceanica	1	gene.Posoc02g03040
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_13_RagTag.726
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-19509, nbisL1-mrna-30323, nbisL1-mrna-8398
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-18375, nbisL1-mrna-20245, nbisL1-mrna-8222
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-16106, nbisL1-mrna-7080
Rhizophoraceae	Kandelia candel	2	add.evm.TU.utg000015l.161, add.evm.TU.utg000018l.48
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-18451, nbisL1-mrna-8080
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-15074, nbisL1-mrna-22753, nbisL1-mrna-9763
Salicaceae	Populus euphratica	2	populus_peu31825, populus_peu35483
Solanaceae	Lycium barbarum	3	gene-LOC132605959, gene-LOC132635031, gene-LOC132640736
Solanaceae	Solanum chilense	4	SOLCI002190600, SOLCI004534000, SOLCI004534200 ... SOLCI005905000
Solanaceae	Solanum pennellii	4	gene-LOC107013798, gene-LOC107018450, gene-LOC107018865 ... gene-LOC107021696
Tamaricaceae	Reaumuria soongarica	3	STRG.29592_chr10_+, gene_15128, gene_851
Tamaricaceae	Tamarix chinensis	1	TC09G2044
Zosteraceae	Zostera marina	4	Zosma01g17440.v3.1, Zosma04g25670.v3.1, Zosma05g27860.v3.1 ... Zosma05g27870.v3.1