halophFGD

Basic Information

Locus ID: TC09G1911

Species & Taxonomic ID: Tamarix chinensis & 189791

Genome Assembly: GCA_030549775.1

Description: Myb/SANT-like DNA-binding domain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr9	70209213	70210496	-	TC09G1911

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.24	49,479.77 Da	53.43	59.84	-1.06

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF13837	Myb/SANT-like DNA-binding domain	106	231	1.8E-23	IPR044822
Gene3D	G3DSA:1.10.10.60	-	109	181	1.1E-14	-
MobiDBLite	mobidb-lite	consensus disorder prediction	256	295	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	69	97	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	256	274	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	18	41	-	-
Coils	Coil	Coil	388	422	-	-
Coils	Coil	Coil	363	385	-	-

Best hit

Source	Best Hit ID	Description
TAIR	AT1G21200.1	sequence-specific DNA binding transcription factors.
RefSeq	XP_034676621.1	uncharacterized protein LOC117907254 [Vitis riparia]
TrEMBL	F6GY28	Myb_DNA-bind_4 domain-containing protein OS=Vitis vinifera OX=29760 GN=VIT_18s0072g00690 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	8	jg10495, jg11989, jg15027, jg23085, jg28442, jg31986, jg3549 ... jg6401
Aizoaceae	Mesembryanthemum crystallinum	3	gene_10033, gene_20222, gene_972
Amaranthaceae	Atriplex hortensis	4	Ah004963, Ah024421, Ah030807, Ah038991
Amaranthaceae	Beta vulgaris	2	BVRB_4g072390, BVRB_7g160700
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg17964, Sbi_jg27492, Sbi_jg33229, Sbi_jg39024 ... Sbi_jg54311, Sbi_jg62591
Amaranthaceae	Salicornia europaea	3	Seu_jg10893, Seu_jg1172, Seu_jg7944
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00005651, GOSA_00021310, GOSA_00023544
Amaranthaceae	Suaeda glauca	6	Sgl15260, Sgl20402, Sgl23879, Sgl29050, Sgl71365, Sgl74958
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000005842, gene:ENSEOMG00000008478 ... gene:ENSEOMG00000015507, gene:ENSEOMG00000027485, gene:ENSEOMG00000034827, gene:ENSEOMG00000038517, gene:ENSEOMG00000039419, gene:ENSEOMG00000041468, gene:ENSEOMG00000049592
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.1AG0014530, CQ.Regalona.r1.1BG0011510 ... CQ.Regalona.r1.4AG0001210, CQ.Regalona.r1.4BG0001350, CQ.Regalona.r1.7AG0019390, CQ.Regalona.r1.7BG0021980
Anacardiaceae	Pistacia vera	5	pistato.v30050010, pistato.v30052750, pistato.v30101840 ... pistato.v30274450, pistato.v30274510
Apiaceae	Apium graveolens	5	Ag2G02951, Ag3G01132, Ag3G02622, Ag7G02122, Ag9G01437
Arecaceae	Cocos nucifera	7	COCNU_01G018930, COCNU_02G010320, COCNU_11G000350 ... COCNU_14G009310, COCNU_15G001640, scaffold005732G000010, scaffold084985G000010
Arecaceae	Phoenix dactylifera	8	gene-LOC103697736, gene-LOC103701210, gene-LOC103702316 ... gene-LOC103703173, gene-LOC103704355, gene-LOC103710100, gene-LOC103713568, gene-LOC120108115
Asparagaceae	Asparagus officinalis	1	AsparagusV1_01.249.V1.1
Asteraceae	Flaveria trinervia	4	Ftri11G09237, Ftri12G01360, Ftri12G02579, Ftri9G08855
Brassicaceae	Arabidopsis thaliana	3	AT1G21200.1, AT1G76870.1, AT3G10040.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10010018m.g.v1.0, Thhalv10020795m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp1g18840.v2.2, Sp3g08350.v2.2
Brassicaceae	Brassica nigra	7	BniB01g054880.2N, BniB01p000033.2N, BniB03g009010.2N ... BniB03g023580.2N, BniB03g033460.2N, BniB04g035820.2N, BniB06g049290.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq02G1516
Cymodoceaceae	Cymodocea nodosa	7	gene.Cymno01g05390, gene.Cymno01g05400, gene.Cymno01g05430 ... gene.Cymno01g05510, gene.Cymno07g10320, gene.Cymno08g03440, gene.Cymno08g03700
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate04g08660, gene.Thate06g11530, gene.Thate07g01790
Malvaceae	Hibiscus hamabo Siebold & Zucc.	4	nbisL1-mrna-12249, nbisL1-mrna-5637, nbisL1-mrna-5638 ... nbisL1-mrna-8581
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG01.2156, evm.TU.LG06.202, evm.TU.LG09.256
Plantaginaceae	Plantago ovata	2	Pov_00004953, Pov_00039876
Plumbaginaceae	Limonium bicolor	1	Lb2G09779
Poaceae	Echinochloa crus-galli	12	AH02.1494, AH04.367, AH07.2125, BH02.1568, BH03.810 ... BH07.2087, CH02.1714, CH05.369, CH07.1642, CH07.1644, CH07.1983, CH08.1563
Poaceae	Eleusine coracana subsp. coracana	7	gene-QOZ80_1AG0015070, gene-QOZ80_2AG0133290 ... gene-QOZ80_2BG0188830, gene-QOZ80_5AG0382520, gene-QOZ80_5BG0429410, gene-QOZ80_9AG0675820, gene-QOZ80_9BG0699620
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.1HG0094470.1.CDS1 ... HORVU.MOREX.r3.3HG0238260.1.CDS1, HORVU.MOREX.r3.4HG0349550.1.CDS1
Poaceae	Oryza coarctata	8	Oco01G009230, Oco02G009520, Oco03G011980, Oco04G012440 ... Oco21G001850, Oco22G002660, Oco23G002380, Oco24G001900
Poaceae	Oryza sativa	4	LOC_Os01g21590.1, LOC_Os02g33770.1, LOC_Os11g06410.1 ... LOC_Os12g06640.2
Poaceae	Paspalum vaginatum	6	gene-BS78_03G139000, gene-BS78_04G156500, gene-BS78_K043100 ... gene-BS78_05G061800, gene-BS78_08G034900, gene-BS78_K043200
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0104268, Pt_Chr0603658, Pt_Chr0605259, Pt_Chr0703283
Poaceae	Sporobolus alterniflorus	14	Chr02G022230, Chr03G007510, Chr04G022720, Chr05G013110 ... Chr06G010280, Chr06G024490, Chr08G007750, Chr09G014790, Chr13G010820, Chr15G011730, Chr16G009960, Chr17G009010, Chr19G012500, Chr27G003440
Poaceae	Thinopyrum elongatum	4	Tel1E01G736700, Tel3E01G199800, Tel4E01G179600 ... Tel5E01G227100
Poaceae	Triticum dicoccoides	10	gene_TRIDC1AG064060, gene_TRIDC1BG073190 ... gene_TRIDC3AG014440, gene_TRIDC3BG018940, gene_TRIDC3BG018950, gene_TRIDC3BG018960, gene_TRIDC4AG033230, gene_TRIDC4BG017420, gene_TRIDC5AG021150, gene_TRIDC5BG021820
Poaceae	Triticum aestivum	16	TraesCS1A02G437400.1.cds1, TraesCS1B02G472000.1.cds1 ... TraesCS1D02G445200.1.cds1, TraesCS3A02G116400.1.cds1, TraesCS3A02G116500.1.cds1, TraesCS3A02G116600.1.cds1, TraesCS3B02G135500.1.cds1, TraesCS3B02G135600.1.cds1, TraesCS3D02G118300.1, TraesCS3D02G118400.1.cds1, TraesCS4A02G209100.1.cds1, TraesCS4B02G112700.1.cds1, TraesCS4D02G110200.1.cds1, TraesCS5A02G124200.1.cds1, TraesCS5B02G124000.1.cds1, TraesCS5D02G132100.1.cds1
Poaceae	Zea mays	7	Zm00001eb092040_P001, Zm00001eb130740_P001 ... Zm00001eb181760_P001, Zm00001eb202410_P001, Zm00001eb243260_P001, Zm00001eb340550_P001, Zm00001eb407690_P001
Poaceae	Zoysia japonica	5	nbis-gene-18854, nbis-gene-20774, nbis-gene-25570 ... nbis-gene-27113, nbis-gene-6522
Poaceae	Zoysia macrostachya	5	Zma_g10239, Zma_g13661, Zma_g16441, Zma_g18450, Zma_g24785
Portulacaceae	Portulaca oleracea	8	evm.TU.LG01.1127, evm.TU.LG04.1289, evm.TU.LG04.1353 ... evm.TU.LG05.1822, evm.TU.LG05.1878, evm.TU.LG14.464, evm.TU.LG18.1804, evm.TU.LG20.118
Posidoniaceae	Posidonia oceanica	4	gene.Posoc03g10200, gene.Posoc05g15500, gene.Posoc05g16620 ... gene.Posoc07g07230
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.Scaffold_12_RagTag.8, evm.TU.Scaffold_1_RagTag.1473 ... evm.TU.Scaffold_2_RagTag.953, evm.TU.Scaffold_7_RagTag.1224, evm.TU.Scaffold_8_RagTag.535
Rhizophoraceae	Carallia pectinifolia	5	nbisL1-mrna-18605, nbisL1-mrna-24792, nbisL1-mrna-4254 ... nbisL1-mrna-6123, nbisL1-mrna-9725
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-1013, nbisL1-mrna-18193, nbisL1-mrna-2720 ... nbisL1-mrna-4536
Rhizophoraceae	Ceriops zippeliana	6	nbisL1-mrna-10056, nbisL1-mrna-13200, nbisL1-mrna-18111 ... nbisL1-mrna-19324, nbisL1-mrna-3983, nbisL1-mrna-3986
Rhizophoraceae	Kandelia candel	4	add.evm.TU.utg000002l.139, add.evm.TU.utg000009l.357 ... add.evm.TU.utg000016l.203, add.evm.TU.utg000018l.247
Rhizophoraceae	Kandelia obovata	4	Maker00002790, Maker00004965, Maker00011627, Maker00017850
Rhizophoraceae	Rhizophora apiculata	5	nbisL1-mrna-18888, nbisL1-mrna-19828, nbisL1-mrna-20302 ... nbisL1-mrna-20559, nbisL1-mrna-21832
Rhizophoraceae	Rhizophora mangle	6	nbisL1-mrna-11554, nbisL1-mrna-18429, nbisL1-mrna-18641 ... nbisL1-mrna-414, nbisL1-mrna-5786, nbisL1-mrna-5787
Salicaceae	Populus euphratica	8	populus_peu04333, populus_peu11597, populus_peu11598 ... populus_peu14878, populus_peu25727, populus_peu32553, populus_peu35131, populus_peu37431
Solanaceae	Lycium barbarum	5	gene-LOC132598750, gene-LOC132604594, gene-LOC132606386 ... gene-LOC132611357, gene-LOC132629928
Solanaceae	Solanum chilense	3	SOLCI000086200, SOLCI000670900, SOLCI005330000
Solanaceae	Solanum pennellii	3	gene-LOC107007399, gene-LOC107007801, gene-LOC107029590
Tamaricaceae	Reaumuria soongarica	3	STRG.28648_chr04_-, gene_15100, gene_4585
Tamaricaceae	Tamarix chinensis	3	TC02G2554, TC02G3714, TC09G1911
Zosteraceae	Zostera marina	3	Zosma02g06980.v3.1, Zosma03g07960.v3.1, Zosma05g06960.v3.1