Basic Information
Locus ID:
TC09G1539
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 52280441 | 52291587 | + | TC09G1539 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.21 | 67,472.60 Da | 29.30 | 100.21 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 117 | 174 | 1.7E-7 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 25 | 64 | 3.8E-11 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 333 | 535 | 4.6E-46 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 314 | 591 | 5.4E-73 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 25 | 191 | 4.25E-35 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 407 | 602 | 6.0E-60 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 290 | 406 | 7.9E-21 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 24 | 211 | 2.2E-55 | IPR032675 |
| SMART | SM00220 | serkin_6 | 331 | 609 | 2.9E-31 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 331 | 609 | 38.788654 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 165 | 187 | 7.034293 | IPR001611 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 453 | 465 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 337 | 360 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G62710.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_006439659.1 | LRR receptor-like serine/threonine-protein kinase FEI 2 [Citrus clementina] | 0 |
| C0LGF4 | LRR receptor-like serine/threonine-protein kinase FEI 1 OS=Arabidopsis thaliana OX=3702 GN=FEI1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2H5NFP5 | Protein kinase domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_041070 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg18643 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19600 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah000991 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g115250 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00015052 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl51118, Sgl56426 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000004727 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0021390, CQ.Regalona.r1.5BG0022740 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30137820 |
| Apiaceae | Apium graveolens | 4 | Ag2G01048, Ag4G00334, Ag5G00631, AgUnG01281 |
| Arecaceae | Cocos nucifera | 1 | COCNU_14G012830 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103712044, gene-LOC103722252 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.1508.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri18G29501, Ftri1G02047, Ftri9G19821 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G62710.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003855m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g25880.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB06g010990.2N, BniB06g011130.2N, BniB07g041770.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1826 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G2006 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno15g05030 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g14230 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.879 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00028932 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G26730 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.4223, BH05.4315, CH05.4544 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0399640, gene-QOZ80_5BG0448340 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0420330.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_000330 |
| Poaceae | Oryza coarctata | 2 | Oco23G011350, Oco24G011150 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g44090.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G169600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0704812, Pt_Chr0704883 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr04G020050, Chr06G021000, Chr07G020690, Chr15G013570 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G013200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG000800, gene_TRIDC5BG000780 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G005300.1, TraesCS5B02G004300.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb033050_P002, Zm00001eb134100_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-44411, nbis-gene-47411 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g25418, Zma_g26208 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG01.2598, evm.TU.LG02.841, evm.TU.LG09.2014 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g13680 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.935 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-14611 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20349 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12508 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000010l.53 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008484 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-807 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-8579 |
| Salicaceae | Populus euphratica | 2 | populus_peu29954, populus_peu29965 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132632696 |
| Solanaceae | Solanum chilense | 1 | SOLCI006943600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014984 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_12602, gene_15961 |
| Tamaricaceae | Tamarix chinensis | 2 | TC05G0102, TC09G1539 |
| Zosteraceae | Zostera marina | 1 | Zosma03g33550.v3.1 |