Basic Information
Locus ID:
TC09G1525
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
Zinc ion binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 51396185 | 51414721 | + | TC09G1525 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.25 | 174,854.95 Da | 53.71 | 80.08 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 897 | 1039 | 4.50554E-19 | - |
| CDD | cd12108 | Hr-like | 364 | 496 | 1.01107E-23 | - |
| CDD | cd00018 | AP2 | 60 | 118 | 1.05213E-30 | IPR001471 |
| CDD | cd16464 | RING-H2_Pirh2 | 1436 | 1478 | 6.737E-17 | - |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 364 | 498 | 1.4E-10 | IPR012312 |
| Pfam | PF00847 | AP2 domain | 58 | 108 | 6.3E-13 | IPR001471 |
| Pfam | PF14599 | Zinc-ribbon | 1483 | 1540 | 6.3E-23 | IPR039512 |
| Pfam | PF13639 | Ring finger domain | 1434 | 1477 | 2.2E-8 | IPR001841 |
| Pfam | PF05495 | CHY zinc finger | 1305 | 1382 | 2.6E-15 | IPR008913 |
| SUPERFAMILY | SSF54171 | DNA-binding domain | 59 | 117 | 3.27E-20 | IPR016177 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1373 | 1427 | 2.35E-15 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 1298 | 1363 | 4.18E-14 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1433 | 1490 | 1.48E-9 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 604 | 756 | 4.4E-5 | - |
| Gene3D | G3DSA:3.30.730.10 | AP2/ERF domain | 59 | 117 | 2.7E-23 | IPR036955 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1429 | 1480 | 3.2E-11 | IPR013083 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 891 | 1058 | 5.8E-15 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 1506 | 1542 | 1.1E-16 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 350 | 514 | 1.1E-20 | - |
| SMART | SM00380 | rav1_2 | 59 | 122 | 1.6E-35 | IPR001471 |
| SMART | SM00184 | ring_2 | 1436 | 1477 | 2.6E-5 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 1298 | 1369 | 22.043341 | IPR008913 |
| ProSiteProfiles | PS51032 | AP2/ERF domain profile. | 59 | 116 | 23.063828 | IPR001471 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1372 | 1435 | 27.549807 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1436 | 1478 | 11.441815 | IPR001841 |
| PRINTS | PR00367 | Ethylene responsive element binding protein signature | 60 | 71 | 1.1E-8 | IPR001471 |
| PRINTS | PR00367 | Ethylene responsive element binding protein signature | 82 | 98 | 1.1E-8 | IPR001471 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 193 | 209 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 32 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 193 | 217 | - | - |
| Coils | Coil | Coil | 369 | 389 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G74770.1 | zinc ion binding. | 0 |
| RefSeq | XP_002266572.2 | PREDICTED: zinc finger protein BRUTUS-like At1g18910 isoform X1 [Vitis vinifera] | 0 |
| F4HVS0 | Zinc finger protein BRUTUS-like At1g74770 OS=Arabidopsis thaliana OX=3702 GN=At1g74770 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5B7C4M7 | Zinc finger protein BRUTUS-like At1g18910 OS=Davidia involucrata OX=16924 GN=Din_043734 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology