Basic Information
Locus ID:
TC09G1363
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
Transmembrane Fragile-X-F protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 44949482 | 44958830 | + | TC09G1363 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.51 | 58,843.86 Da | 48.14 | 104.70 | 0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 463 | 505 | 3.2E-9 | - |
| Pfam | PF10269 | Transmembrane Fragile-X-F protein | 80 | 338 | 6.8E-85 | IPR019396 |
| SUPERFAMILY | SSF57850 | RING/U-box | 457 | 508 | 1.29E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 448 | 512 | 3.9E-14 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 466 | 501 | 11.087743 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G73950.1 | Transmembrane Fragile-X-F-associated protein. | 0 |
| RefSeq | XP_021613556.1 | uncharacterized protein LOC110615771 [Manihot esculenta] | 0 |
| TrEMBL | A0A5B7AGU0 | RING-type domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_025238 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg25663, jg34903, jg34904, jg9188 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19745 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah001445 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30896, Sbi_jg58382 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg28260 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004839 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl54925, Sgl60181, Sgl60182 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000006978, gene:ENSEOMG00000021305 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0018410, CQ.Regalona.r1.5BG0019580 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30146090, pistato.v30225770 |
| Apiaceae | Apium graveolens | 2 | Ag1G01548, Ag3G00938 |
| Arecaceae | Cocos nucifera | 4 | COCNU_03G008410, scaffold019532G000010 ... |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103701851, gene-LOC103721407 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.1423.V1.1, AsparagusV1_07.3685.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri16G29246, Ftri18G01929 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G18470.1, AT1G68820.1, AT1G73950.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10007552m.g.v1.0, Thhalv10018496m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp1g16410.v2.2, Sp5g23930.v2.2, Sp5g29150.v2.2 |
| Brassicaceae | Brassica nigra | 7 | BniB03g007600.2N, BniB03g028040.2N, BniB03g046190.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G2029, Ceq03G2391 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G2168, Cgl03G2528 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno09g02800 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g04310 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG03.499, evm.TU.LG10.425 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00009030, Pov_00019336 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb7G34016, Lb7G34017 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.897, AH03.1874, BH01.1025, BH03.2041, CH01.1076 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_3AG0219520, gene-QOZ80_3BG0264760 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.4HG0336680.1, HORVU.MOREX.r3.5HG0479700.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_005102, gene-QYE76_017385, gene-QYE76_027240 |
| Poaceae | Oryza coarctata | 4 | Oco05G021330, Oco06G022130, Oco17G004570, Oco18G004630 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g49900.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G109900, gene-BS78_02G179700 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0104784, Pt_Chr0502657, Pt_Chr0702227 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr01G007340, Chr04G026740, Chr07G025730, Chr12G030140 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel4E01G077800, Tel5E01G343700 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC4AG042240, gene_TRIDC4BG006730 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS4A02G271200.1, TraesCS4B02G042900.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb054460_P001, Zm00001eb216620_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-14783, nbis-gene-15884, nbis-gene-20012 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g2978, Zma_g32433 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG01.2715, evm.TU.LG02.131, evm.TU.LG09.1368 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g31360, gene.Posoc08g00170 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_17_RagTag.944, evm.TU.Scaffold_4_RagTag.784 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-23672, nbisL1-mrna-28576 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-21419, nbisL1-mrna-984 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-1593, nbisL1-mrna-21920 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000008l.509, evm.TU.utg000013l.530 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00001342, Maker00004468 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-10923, nbisL1-mrna-14396 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-19275, nbisL1-mrna-23116 |
| Salicaceae | Populus euphratica | 5 | populus_peu07021, populus_peu09320, populus_peu20980 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132633301, gene-LOC132641830 |
| Solanaceae | Solanum chilense | 2 | SOLCI002192600, SOLCI006254700 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107014974, gene-LOC107018509 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_15962 |
| Tamaricaceae | Tamarix chinensis | 2 | TC09G1363, TC09G1544 |
| Zosteraceae | Zostera marina | 2 | Zosma03g35440.v3.1, Zosma06g09610.v3.1 |