Basic Information
Locus ID:
TC09G1094
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
zinc finger (C3HC4-type RING finger) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 33315143 | 33316297 | - | TC09G1094 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.90 | 42,254.36 Da | 59.86 | 73.59 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 157 | 200 | 8.26709E-20 | - |
| Pfam | PF13639 | Ring finger domain | 157 | 200 | 1.2E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 149 | 207 | 3.28E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 133 | 206 | 5.1E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 158 | 199 | 4.3E-8 | IPR001841 |
| SMART | SM01197 | FANCL_C_2 | 154 | 207 | 0.0029 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 158 | 200 | 13.13841 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 235 | 256 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 210 | 259 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G72220.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_003634417.1 | PREDICTED: RING-H2 finger protein ATL54 [Vitis vinifera] | 0 |
| Q8LFY8 | RING-H2 finger protein ATL54 OS=Arabidopsis thaliana OX=3702 GN=ATL54 PE=2 SV=2 | 0 | |
| TrEMBL | A0A438FZN5 | RING-type E3 ubiquitin transferase OS=Vitis vinifera OX=29760 GN=ATL54_1 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology