Basic Information
Locus ID:
TC09G0997
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 29132902 | 29133912 | - | TC09G0997 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.75 | 36,644.37 Da | 62.40 | 69.70 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 164 | 207 | 4.47285E-18 | - |
| Pfam | PF13639 | Ring finger domain | 164 | 207 | 2.7E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 151 | 210 | 3.83E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 140 | 213 | 8.9E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 165 | 206 | 2.5E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 165 | 207 | 12.769585 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 305 | 323 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 227 | 248 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 8 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 274 | 336 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G03550.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_043718465.1 | E3 ubiquitin-protein ligase Os04g0590900-like [Telopea speciosissima] | 0 |
| Q9SRQ8 | RING-H2 finger protein ATL51 OS=Arabidopsis thaliana OX=3702 GN=ATL51 PE=2 SV=2 | 0 | |
| TrEMBL | A0A7C9CJD4 | RING-type E3 ubiquitin transferase OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology