Basic Information
Locus ID:
TC09G0845
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 24321122 | 24322716 | + | TC09G0845 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.61 | 41,402.05 Da | 60.38 | 75.13 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08238 | Sel1 repeat | 99 | 114 | 2.8 | IPR006597 |
| Pfam | PF01753 | MYND finger | 330 | 369 | 6.1E-7 | IPR002893 |
| Pfam | PF08238 | Sel1 repeat | 131 | 169 | 0.18 | IPR006597 |
| Pfam | PF08238 | Sel1 repeat | 171 | 200 | 0.26 | IPR006597 |
| SUPERFAMILY | SSF81383 | F-box domain | 16 | 64 | 8.76E-5 | IPR036047 |
| SUPERFAMILY | SSF81901 | HCP-like | 78 | 200 | 2.75E-12 | - |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 338 | 373 | 1.74E-9 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 322 | 372 | 5.6E-9 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 58 | 209 | 1.5E-16 | IPR011990 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 327 | 369 | 10.695247 | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 224 | 256 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_050208085.1 | F-box protein At1g67340 [Mercurialis annua] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9AF49 | MYND-type domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology