Basic Information
Locus ID:
TC09G0679
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Short Name:
UBP12
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 19443963 | 19479130 | + | TC09G0679 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.84 | 146,432.61 Da | 45.63 | 80.43 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02659 | peptidase_C19C | 249 | 577 | 3.54418E-165 | - |
| CDD | cd00121 | MATH | 108 | 231 | 8.98714E-40 | IPR002083 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 1012 | 1222 | 1.4E-54 | IPR029346 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 777 | 1002 | 5.7E-62 | IPR024729 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 251 | 572 | 3.1E-45 | IPR001394 |
| Pfam | PF00917 | MATH domain | 113 | 233 | 1.0E-18 | IPR002083 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 104 | 240 | 2.13E-41 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 246 | 603 | 1.35E-95 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 248 | 576 | 1.9E-88 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 811 | 927 | 4.0E-43 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 103 | 247 | 3.9E-53 | IPR008974 |
| Gene3D | G3DSA:3.10.20.90 | - | 928 | 1025 | 9.4E-27 | - |
| SMART | SM00061 | math_3 | 108 | 212 | 2.3E-20 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 106 | 231 | 38.621994 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 251 | 575 | 39.330776 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 252 | 267 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 491 | 508 | - | IPR018200 |
| Coils | Coil | Coil | 588 | 611 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11910.2 | ubiquitin-specific protease 13. | 0 |
| RefSeq | XP_021721291.1 | ubiquitin carboxyl-terminal hydrolase 13-like isoform X1 [Chenopodium quinoa] | 0 |
| Q84WU2 | Ubiquitin C-terminal hydrolase 13 OS=Arabidopsis thaliana OX=3702 GN=UBP13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9CRZ2 | ubiquitinyl hydrolase 1 OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology