Basic Information
Locus ID:
TC09G0602
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 17156483 | 17161501 | + | TC09G0602 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.60 | 137,081.94 Da | 28.86 | 93.62 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 9 | 349 | 8.9103E-68 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 114 | 151 | 4.9E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 228 | 261 | 5.1E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 273 | 308 | 2.4E-4 | IPR001680 |
| Pfam | PF06957 | Coatomer (COPI) alpha subunit C-terminus | 866 | 1217 | 1.9E-141 | IPR010714 |
| Pfam | PF00400 | WD domain, G-beta repeat | 156 | 193 | 1.7E-7 | IPR001680 |
| Pfam | PF04053 | Coatomer WD associated region | 378 | 800 | 3.3E-131 | IPR006692 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 4 | 347 | 1.28E-63 | IPR036322 |
| SUPERFAMILY | SSF51004 | C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase | 267 | 579 | 1.18E-14 | IPR011048 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 351 | 2.6E-117 | IPR015943 |
| Gene3D | G3DSA:1.25.40.470 | - | 672 | 844 | 2.2E-63 | - |
| SMART | SM00320 | WD40_4 | 154 | 193 | 7.8E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 311 | 349 | 150.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 223 | 262 | 2.9E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 2 | 37 | 31.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 269 | 308 | 1.3E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 112 | 151 | 2.5E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 40 | 77 | 76.0 | IPR001680 |
| PIRSF | PIRSF003354 | Alpha-COP | 1 | 75 | 6.8E-43 | IPR016391 |
| PIRSF | PIRSF003354 | Alpha-COP | 97 | 1215 | 0.0 | IPR016391 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 276 | 317 | 15.788527 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 230 | 264 | 12.74747 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 119 | 151 | 10.759232 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 230 | 264 | 10.601049 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 119 | 160 | 13.549507 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 161 | 194 | 15.320672 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 161 | 194 | 12.631039 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 276 | 309 | 12.367405 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 180 | 194 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 180 | 194 | 2.2E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 138 | 152 | 2.2E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 295 | 309 | 2.2E-7 | IPR020472 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G62020.1 | Coatomer, alpha subunit. | 0 |
| RefSeq | XP_027093238.1 | LOW QUALITY PROTEIN: coatomer subunit alpha-1-like [Coffea arabica] | 0 |
| Q94A40 | Coatomer subunit alpha-1 OS=Arabidopsis thaliana OX=3702 GN=At1g62020 PE=2 SV=2 | 0 | |
| TrEMBL | A0A834G8B8 | Coatomer subunit alpha OS=Rhododendron simsii OX=118357 GN=RHSIM_Rhsim11G0182000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology