Basic Information
Locus ID:
TC09G0552
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 15756121 | 15778611 | - | TC09G0552 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.22 | 83,601.20 Da | 39.91 | 83.99 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 281 | 417 | 9.42833E-72 | - |
| CDD | cd18015 | DEXHc_RecQ1 | 72 | 280 | 2.94045E-129 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 312 | 407 | 2.5E-15 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 92 | 259 | 1.1E-18 | IPR011545 |
| Pfam | PF16124 | RecQ zinc-binding | 420 | 476 | 9.1E-12 | IPR032284 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 129 | 423 | 1.73E-56 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 281 | 478 | 8.4E-65 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 46 | 280 | 1.8E-88 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 481 | 577 | 1.9E-22 | IPR036388 |
| SMART | SM00490 | helicmild6 | 327 | 408 | 3.5E-27 | IPR001650 |
| SMART | SM00487 | ultradead3 | 86 | 289 | 8.8E-26 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 83 | 512 | 3.9E-161 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 298 | 447 | 20.124149 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 98 | 273 | 23.687473 | IPR014001 |
| Coils | Coil | Coil | 4 | 38 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31360.1 | RECQ helicase L2. Encodes a (d)NTP-dependent 3'->5' DNA helicase. This protein can also disrupt D loop structures and may mediate branch migration of Holliday junctions when tested in vitro. The unwinding activity of the enzyme depends on the presence of divalent cations (Mg2+, Mn2+, or Ca2+, but not Zn2+).(d)NTPs are also required with ATP and dATP supporting the greatest amount of DNA unwinding in vitro. | 0 |
| RefSeq | XP_021768372.1 | mediator of RNA polymerase II transcription subunit 34 isoform X1 [Chenopodium quinoa] | 0 |
| Q9FT73 | ATP-dependent DNA helicase Q-like 2 OS=Arabidopsis thaliana OX=3702 GN=RECQL2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J5AD95 | ATP-dependent DNA helicase OS=Nyssa sinensis OX=561372 GN=F0562_035560 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology