Basic Information
Locus ID:
TC09G0485
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 13955385 | 13956251 | + | TC09G0485 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.42 | 32,110.68 Da | 55.73 | 81.25 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 32 | 75 | 1.47576E-17 | - |
| Pfam | PF13639 | Ring finger domain | 32 | 75 | 8.8E-15 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 27 | 81 | 5.18E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 8 | 81 | 1.3E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 33 | 74 | 3.6E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 33 | 75 | 13.256433 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G72220.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_002277896.1 | PREDICTED: E3 ubiquitin-protein ligase Os04g0590900 [Vitis vinifera] | 0 |
| Q8LFY8 | RING-H2 finger protein ATL54 OS=Arabidopsis thaliana OX=3702 GN=ATL54 PE=2 SV=2 | 0 | |
| TrEMBL | F6HT83 | RING-type E3 ubiquitin transferase OS=Vitis vinifera OX=29760 GN=VIT_02s0012g01440 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology