Basic Information
Locus ID:
TC08G2627
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 99378209 | 99380041 | - | TC08G2627 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.76 | 42,600.04 Da | 55.88 | 77.42 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 332 | 371 | 1.9E-5 | IPR002893 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 326 | 372 | 5.58E-8 | - |
| SUPERFAMILY | SSF81901 | HCP-like | 88 | 207 | 1.09E-11 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 73 | 264 | 2.1E-17 | IPR011990 |
| Gene3D | G3DSA:6.10.140.2220 | - | 321 | 374 | 2.2E-8 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 329 | 371 | 10.729815 | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 220 | 238 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 239 | 253 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 220 | 260 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_012085679.1 | F-box protein At1g67340 [Jatropha curcas] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C8ZJ29 | MYND-type domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology