Basic Information
Locus ID:
TC08G2555
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
Raffinose synthase or seed imbibition protein Sip1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 97754074 | 97758434 | + | TC08G2555 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.70 | 97,431.10 Da | 39.15 | 85.46 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05691 | Raffinose synthase or seed imbibition protein Sip1 | 142 | 871 | 1.2E-250 | IPR008811 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 335 | 666 | 1.34E-46 | IPR017853 |
| Gene3D | G3DSA:3.20.20.70 | Aldolase class I | 335 | 656 | 8.3E-10 | IPR013785 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G57520.1 | seed imbibition 2. | 0 |
| RefSeq | XP_011005611.1 | PREDICTED: probable galactinol--sucrose galactosyltransferase 2 [Populus euphratica] | 0 |
| Q94A08 | Probable galactinol--sucrose galactosyltransferase 2 OS=Arabidopsis thaliana OX=3702 GN=RFS2 PE=2 SV=2 | 0 | |
| TrEMBL | A0A4U5Q998 | galactinol--sucrose galactosyltransferase OS=Populus alba OX=43335 GN=D5086_0000123800 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology