Basic Information
Locus ID:
TC08G2504
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
Belongs to the histone deacetylase family. HD Type 1 subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 96409399 | 96412740 | - | TC08G2504 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.27 | 43,116.35 Da | 40.28 | 78.62 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09991 | HDAC_classI | 29 | 339 | 0.0 | - |
| Pfam | PF00850 | Histone deacetylase domain | 43 | 337 | 6.5E-87 | IPR023801 |
| SUPERFAMILY | SSF52768 | Arginase/deacetylase | 24 | 382 | 3.17E-123 | IPR023696 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 16 | 383 | 1.9E-134 | IPR037138 |
| PIRSF | PIRSF037913 | HDAC_I_euk | 7 | 383 | 3.6E-199 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 157 | 180 | 1.0E-24 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 189 | 204 | 1.0E-24 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 274 | 284 | 1.0E-24 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 176 | 192 | 3.1E-62 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 45 | 62 | 3.1E-62 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 114 | 131 | 3.1E-62 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 235 | 248 | 3.1E-62 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 78 | 96 | 3.1E-62 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 135 | 155 | 3.1E-62 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 252 | 270 | 3.1E-62 | IPR003084 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G63110.1 | histone deacetylase 6. RPD3-like histone deacetylase. HDA6 mutations specifically increase the expression of auxin-responsive transgenes, suggesting a role in transgene silencing. | 0 |
| RefSeq | XP_010678848.1 | histone deacetylase 6 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9FML2 | Histone deacetylase 6 OS=Arabidopsis thaliana OX=3702 GN=HDA6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A445KJ01 | Histone deacetylase OS=Glycine soja OX=3848 GN=D0Y65_011230 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology