Basic Information
Locus ID:
TC08G2439
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 94897579 | 94898619 | + | TC08G2439 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.78 | 37,572.11 Da | 55.42 | 69.88 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 171 | 214 | 7.71532E-18 | - |
| Pfam | PF13639 | Ring finger domain | 171 | 214 | 2.0E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 162 | 219 | 3.53E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 146 | 219 | 9.1E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 172 | 213 | 6.2E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 172 | 214 | 12.533537 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 32 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 307 | 346 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 248 | 268 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 320 | 334 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 17 | 32 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G17600.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_022719917.1 | RING-H2 finger protein ATL52-like [Durio zibethinus] | 0 |
| Q9LF64 | RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1 | 0 | |
| TrEMBL | A0A834TQ89 | RING-type E3 ubiquitin transferase OS=Senna tora OX=362788 GN=G2W53_017111 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology