halophFGD

Basic Information

Locus ID: TC08G2295

Species & Taxonomic ID: Tamarix chinensis & 189791

Genome Assembly: GCA_030549775.1

Description: F-box LRR-repeat protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr8	90991869	90993635	+	TC08G2295

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.13	64,811.28 Da	36.73	99.29	-0.02

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00646	F-box domain	13	49	3.6E-4	IPR001810
SUPERFAMILY	SSF52047	RNI-like	312	558	9.81E-27	-
SUPERFAMILY	SSF81383	F-box domain	13	48	3.53E-6	IPR036047
SUPERFAMILY	SSF52047	RNI-like	102	362	7.06E-25	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	6	265	1.9E-22	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	394	473	2.4E-7	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	266	387	3.6E-20	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	474	581	2.1E-10	IPR032675
SMART	SM00367	LRR_CC_2	292	317	71.0	IPR006553
SMART	SM00367	LRR_CC_2	188	213	0.31	IPR006553
SMART	SM00367	LRR_CC_2	500	525	14.0	IPR006553
SMART	SM00367	LRR_CC_2	344	369	22.0	IPR006553
SMART	SM00367	LRR_CC_2	425	450	22.0	IPR006553
SMART	SM00367	LRR_CC_2	318	343	17.0	IPR006553

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K03360 (F-box and leucine-rich repeat protein GRR1)

Pathway:

ko04111 (Cell cycle - yeast) map04111 (Cell cycle - yeast) ko04120 (Ubiquitin mediated proteolysis) map04120 (Ubiquitin mediated proteolysis)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G80630.1	RNI-like superfamily protein.
RefSeq	XP_010691762.1	F-box/LRR-repeat protein 20 [Beta vulgaris subsp. vulgaris]
TrEMBL	A0A6P3Z583	F-box/LRR-repeat protein 2 OS=Ziziphus jujuba OX=326968 GN=LOC107409080 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Aizoaceae	Mesembryanthemum crystallinum	19	gene_21430, gene_21431, gene_21432, gene_21433, gene_21436 ... gene_21437, gene_21453, gene_21454, gene_21456, gene_21457, gene_21459, gene_21460, gene_26246, gene_26247, gene_26248, gene_26251, gene_26255, gene_26256, gene_26257
Amaranthaceae	Atriplex hortensis	6	Ah010442, Ah010443, Ah010444, Ah010447, Ah010794, Ah024164
Amaranthaceae	Beta vulgaris	3	BVRB_7g160670, BVRB_9g218820, BVRB_9g218830
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg24776, Sbi_jg8641
Amaranthaceae	Salicornia europaea	1	Seu_jg19963
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00005111
Amaranthaceae	Suaeda glauca	3	Sgl56011, Sgl60655, Sgl61204
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000015098, gene:ENSEOMG00000019679 ... gene:ENSEOMG00000035959, gene:ENSEOMG00000049759, gene:ENSEOMG00000052680, gene:ENSEOMG00000053013
Amaranthaceae	Chenopodium quinoa	16	CQ.Regalona.r1.1AG0013100, CQ.Regalona.r1.1BG0012960 ... CQ.Regalona.r1.7BG0009310, CQ.Regalona.r1.7BG0009320, CQ.Regalona.r1.7BG0009330, CQ.Regalona.r1.7BG0009340, CQ.Regalona.r1.7BG0009360, CQ.Regalona.r1.7BG0009670, CQ.Regalona.r1.7BG0011330, CQ.Regalona.r1.9AG0008630, CQ.Regalona.r1.9AG0009240, CQ.Regalona.r1.9AG0015160, CQ.Regalona.r1.9AG0015230, CQ.Regalona.r1.9AG0015240, CQ.Regalona.r1.9AG0015250, CQ.Regalona.r1.9BG0013090
Apiaceae	Apium graveolens	1	Ag4G00092
Asteraceae	Flaveria trinervia	1	Ftri1G24598
Brassicaceae	Arabidopsis thaliana	1	AT1G80630.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10018340m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp5g35130.v2.2
Brassicaceae	Brassica nigra	1	BniB06g068330.2N
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG01.792
Portulacaceae	Portulaca oleracea	4	evm.TU.LG08.980, evm.TU.LG08.981, evm.TU.LG22.91 ... evm.TU.LG22.92
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.57916.3, evm.TU.57917.3
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-6695
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-16976
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-12271, nbisL1-mrna-12272
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-17128
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-20704
Salicaceae	Populus euphratica	1	populus_peu34905
Solanaceae	Lycium barbarum	4	gene-LOC132631481, gene-LOC132631483, gene-LOC132633051 ... gene-LOC132634305
Solanaceae	Solanum chilense	1	SOLCI003651800
Solanaceae	Solanum pennellii	1	gene-LOC107013683
Tamaricaceae	Reaumuria soongarica	2	STRG.19304_chr07_+, STRG.19306_chr07_-
Tamaricaceae	Tamarix chinensis	2	TC08G2295, TC08G2298