Basic Information
Locus ID:
TC08G2213
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 88842004 | 88849390 | - | TC08G2213 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.82 | 85,563.71 Da | 40.01 | 84.72 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 498 | 535 | 0.002 | IPR001680 |
| Pfam | PF17814 | LisH-like dimerisation domain | 5 | 33 | 3.0E-5 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 396 | 713 | 5.13E-39 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 351 | 558 | 5.9E-26 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 559 | 741 | 3.2E-11 | IPR015943 |
| SMART | SM00320 | WD40_4 | 583 | 626 | 150.0 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 8.4E-5 | IPR006594 |
| SMART | SM00668 | ctlh | 34 | 92 | 2.6E-14 | IPR006595 |
| SMART | SM00320 | WD40_4 | 539 | 580 | 0.0036 | IPR001680 |
| SMART | SM00320 | WD40_4 | 495 | 536 | 1.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 629 | 669 | 12.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 449 | 489 | 5.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 389 | 428 | 5.1 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.098164 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 502 | 545 | 10.541869 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.593289 | IPR006595 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15880.1 | WUS-interacting protein 2. | 0 |
| RefSeq | XP_049395817.1 | topless-related protein 4 isoform X1 [Solanum stenotomum] | 0 |
| Q27GK7 | Topless-related protein 4 OS=Arabidopsis thaliana OX=3702 GN=TPR4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A3Q7FRL5 | Topless-related protein 4-like OS=Solanum lycopersicum OX=4081 GN=101250003 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000042190 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30080380, pistato.v30275980 |
| Apiaceae | Apium graveolens | 1 | Ag4G00121 |
| Brassicaceae | Brassica nigra | 3 | BniB03g066280.2N, BniB05g041810.2N, BniB05g054270.2N |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-10809 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00027742 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G25036 |
| Posidoniaceae | Posidonia oceanica | 9 | gene.Posoc02g00930, gene.Posoc02g09460, gene.Posoc02g27990 ... |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G2213 |