Basic Information
Locus ID:
TC08G1902
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
Poly(A) polymerase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 79672778 | 79682417 | + | TC08G1902 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.84 | 84,411.62 Da | 44.72 | 79.83 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 59 | 214 | 5.40487E-26 | - |
| Pfam | PF04928 | Poly(A) polymerase central domain | 20 | 363 | 2.1E-110 | IPR007012 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 366 | 426 | 2.4E-9 | IPR007010 |
| Pfam | PF01909 | Nucleotidyltransferase domain | 93 | 160 | 9.4E-6 | IPR002934 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 215 | 363 | 1.6E-64 | - |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 366 | 490 | 7.06E-34 | IPR011068 |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 16 | 213 | 6.48E-48 | IPR043519 |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 366 | 478 | 5.5E-23 | - |
| Gene3D | G3DSA:1.10.1410.10 | - | 20 | 362 | 1.3E-154 | - |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 52 | 208 | 1.3E-154 | IPR043519 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 538 | 561 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 742 | 762 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 541 | 561 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 663 | 677 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 653 | 677 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 743 | 762 | - | - |
| Coils | Coil | Coil | 760 | 762 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32850.7 | nuclear poly(a) polymerase. Encodes a nuclear poly(A) polymerase. Located in the nucleus. | 0 |
| RefSeq | XP_022146692.1 | nuclear poly(A) polymerase 4-like isoform X1 [Momordica charantia] | 0 |
| Q8VYW1 | Nuclear poly(A) polymerase 4 OS=Arabidopsis thaliana OX=3702 GN=PAPS4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6J1D0A1 | polynucleotide adenylyltransferase OS=Momordica charantia OX=3673 GN=LOC111015833 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology