Basic Information
Locus ID:
TC08G1816
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 77256991 | 77257560 | + | TC08G1816 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.35 | 16,098.80 Da | 17.77 | 76.99 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09612 | Jacalin | 33 | 151 | 5.98311E-42 | IPR033734 |
| Pfam | PF01419 | Jacalin-like lectin domain | 22 | 152 | 1.2E-28 | IPR001229 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 12 | 152 | 8.5E-42 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 7 | 151 | 2.0E-51 | IPR036404 |
| SMART | SM00915 | Jacalin_2 | 22 | 152 | 2.4E-31 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 11 | 152 | 45.637127 | IPR001229 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G73040.1 | Mannose-binding lectin superfamily protein. | 0 |
| RefSeq | XP_008244753.1 | PREDICTED: jacalin-related lectin 19-like [Prunus mume] | 0 |
| Q9SSM3 | Jacalin-related lectin 19 OS=Arabidopsis thaliana OX=3702 GN=JAL19 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6J5WX50 | Jacalin-type lectin domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS19028 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology