Basic Information
Locus ID:
TC08G1437
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
Ring finger protein (C3H2C3 type) 6
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 62596222 | 62617524 | - | TC08G1437 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.33 | 30,906.50 Da | 63.18 | 97.06 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 227 | 270 | 3.5E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 225 | 272 | 1.85E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 188 | 274 | 5.9E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 228 | 269 | 3.5E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 228 | 270 | 12.533537 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 36 | 55 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G32361.1 | RING/U-box superfamily protein. Putative RING-H2 finger protein ATL1F precursor. | 0 |
| RefSeq | XP_007157143.1 | hypothetical protein PHAVU_002G046400g [Phaseolus vulgaris] | 0 |
| Q08CG8 | RING finger protein 44 OS=Danio rerio OX=7955 GN=rnf44 PE=2 SV=1 | 0 | |
| TrEMBL | V7CG40 | RING-type domain-containing protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_002G046400g PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for TC08G1437.