Basic Information
Locus ID:
TC08G0817
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
E3 ubiquitin-protein ligase RING1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 27273463 | 27274743 | - | TC08G0817 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.30 | 45,996.92 Da | 87.94 | 55.38 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 204 | 245 | 6.08884E-24 | - |
| Pfam | PF14369 | zinc-ribbon | 12 | 43 | 2.3E-12 | IPR039525 |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 290 | 394 | 1.9E-37 | IPR010543 |
| Pfam | PF13639 | Ring finger domain | 203 | 245 | 5.7E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 184 | 251 | 9.5E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 169 | 251 | 3.3E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 204 | 244 | 2.1E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 204 | 245 | 11.884405 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 377 | 410 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 74 | 122 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 251 | 291 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 377 | 411 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 251 | 289 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39720.1 | RING-H2 finger C2A. Encodes a putative RING-H2 finger protein RHC2a. | 0 |
| RefSeq | XP_027110958.1 | probable E3 ubiquitin-protein ligase RHC2A [Coffea arabica] | 0 |
| O22283 | Probable E3 ubiquitin-protein ligase RHC2A OS=Arabidopsis thaliana OX=3702 GN=RHC2A PE=2 SV=1 | 0 | |
| TrEMBL | A0A6P6W6E6 | RING-type E3 ubiquitin transferase OS=Coffea arabica OX=13443 GN=LOC113730463 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology