Basic Information
Locus ID:
TC08G0652
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 19600717 | 19603327 | - | TC08G0652 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.43 | 29,524.55 Da | 54.43 | 81.22 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF09280 | XPC-binding domain | 148 | 203 | 9.5E-24 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 37 | 75 | 1.8E-14 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 228 | 263 | 3.7E-12 | IPR015940 |
| SUPERFAMILY | SSF46934 | UBA-like | 22 | 81 | 1.53E-11 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 145 | 209 | 7.85E-23 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 209 | 269 | 4.86E-15 | IPR009060 |
| Gene3D | G3DSA:1.10.8.10 | - | 30 | 80 | 3.3E-21 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 220 | 268 | 1.3E-23 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 139 | 203 | 1.8E-27 | IPR036353 |
| SMART | SM00727 | CBM | 146 | 189 | 2.3E-6 | IPR006636 |
| SMART | SM00165 | uba_6 | 37 | 77 | 7.7E-6 | IPR015940 |
| SMART | SM00165 | uba_6 | 228 | 265 | 1.0E-7 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 9 | 269 | 6.9E-80 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 35 | 78 | 12.739671 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 225 | 266 | 13.727652 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 174 | 196 | 4.1E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 254 | 269 | 4.1E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 222 | 238 | 4.1E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 239 | 253 | 4.1E-34 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 102 | 121 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38470.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_024026135.1 | ubiquitin receptor RAD23d [Morus notabilis] | 0 |
| Q84L30 | Ubiquitin receptor RAD23d OS=Arabidopsis thaliana OX=3702 GN=RAD23D PE=1 SV=2 | 0 | |
| TrEMBL | A0A7C9CTH9 | Ubiquitin receptor RAD23 OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology