Basic Information
Locus ID:
TC08G0615
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
Autophagy-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 18118473 | 18148879 | + | TC08G0615 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.96 | 52,895.48 Da | 46.72 | 71.29 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 343 | 373 | 0.0079 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 121 | 401 | 4.0E-33 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 127 | 459 | 7.0E-22 | IPR015943 |
| SMART | SM00320 | WD40_4 | 333 | 374 | 0.017 | IPR001680 |
| SMART | SM00320 | WD40_4 | 119 | 155 | 26.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 290 | 330 | 0.1 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 62 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 55 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_010684410.1 | autophagy-related protein 18a [Beta vulgaris subsp. vulgaris] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C8YQG3 | Autophagy-related protein 18a-like OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology