Basic Information
Locus ID:
TC08G0420
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 10404517 | 10408839 | - | TC08G0420 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.09 | 35,017.74 Da | 31.71 | 74.42 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 189 | 245 | 2.02395E-10 | - |
| Pfam | PF12906 | RING-variant domain | 189 | 244 | 1.6E-8 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 185 | 248 | 1.55E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 178 | 253 | 1.2E-15 | IPR013083 |
| SMART | SM00744 | ringv_2 | 188 | 245 | 2.7E-14 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 181 | 251 | 18.894684 | IPR011016 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G34200.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_008225316.1 | PREDICTED: uncharacterized protein LOC103324972 [Prunus mume] | 0 |
| TrEMBL | A0A5J4ZCV1 | RING-CH-type domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_018132 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology