Basic Information
Locus ID:
TC08G0179
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
U4 U6.U5 tri-snRNP-associated protein 2-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 4304752 | 4305338 | - | TC08G0179 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.08 | 13,851.45 Da | 60.33 | 68.47 | -0.95 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 7 | 90 | 2.8E-10 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 7 | 92 | 2.55E-16 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 3 | 98 | 3.7E-19 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 1 | 93 | 15.083123 | IPR028889 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 92 | 118 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22350.1 | Ubiquitin C-terminal hydrolases superfamily protein. | 0 |
| RefSeq | XP_024156684.1 | U4/U6.U5 tri-snRNP-associated protein 2 isoform X3 [Rosa chinensis] | 0 |
| Q5R761 | Ubiquitin carboxyl-terminal hydrolase 39 OS=Pongo abelii OX=9601 GN=USP39 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7J7GUB0 | USP domain-containing protein OS=Camellia sinensis OX=4442 GN=HYC85_018317 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC120108275 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G18793 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G0179 |