Basic Information
Locus ID:
TC08G0156
Species & Taxonomic ID:
Tamarix chinensis & 189791
Genome Assembly:
GCA_030549775.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 3808919 | 3809749 | + | TC08G0156 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.53 | 30,137.55 Da | 66.83 | 71.05 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 228 | 265 | 2.53572E-9 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 225 | 270 | 2.5E-12 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 217 | 273 | 9.28E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 207 | 276 | 9.3E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 228 | 265 | 6.4E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 228 | 266 | 11.456568 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 159 | 178 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 117 | 140 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22250.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010686766.2 | uncharacterized protein LOC104900931 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A438JGF1 | RING-type domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_014658 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology