halophFGD

Basic Information

Locus ID: TC07G2682

Species & Taxonomic ID: Tamarix chinensis & 189791

Genome Assembly: GCA_030549775.1

Description: WD repeat-containing protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr7	104789722	104797479	-	TC07G2682

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.69	43,620.28 Da	33.26	86.83	-0.15

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00200	WD40	98	391	3.25355E-93	-
Pfam	PF00400	WD domain, G-beta repeat	223	260	6.0E-8	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	143	176	2.4E-8	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	278	303	0.017	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	307	348	2.7E-4	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	180	218	6.0E-11	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	355	391	2.8E-4	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	98	130	9.8E-6	IPR001680
SUPERFAMILY	SSF50978	WD40 repeat-like	93	391	2.98E-91	IPR036322
Gene3D	G3DSA:2.130.10.10	-	82	395	3.4E-121	IPR015943
SMART	SM00320	WD40_4	221	260	6.1E-11	IPR001680
SMART	SM00320	WD40_4	179	218	1.9E-13	IPR001680
SMART	SM00320	WD40_4	137	176	1.6E-9	IPR001680
SMART	SM00320	WD40_4	95	134	2.2E-8	IPR001680
SMART	SM00320	WD40_4	263	303	0.0045	IPR001680
SMART	SM00320	WD40_4	306	348	5.4E-5	IPR001680
SMART	SM00320	WD40_4	351	392	0.38	IPR001680
PIRSF	PIRSF002394	GNBP_B	50	394	2.5E-72	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	102	143	11.009724	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	228	265	12.736494	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	228	269	16.590563	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	271	312	10.876051	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	144	185	16.423473	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	331	357	9.97376	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	102	137	9.09833	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	186	227	18.662491	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	186	223	14.502848	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	144	180	12.341042	-
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	335	349	-	IPR019775
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	205	219	-	IPR019775
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	247	261	-	IPR019775
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	163	177	-	IPR019775
PRINTS	PR00320	G protein beta WD-40 repeat signature	163	177	8.4E-9	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	247	261	8.4E-9	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	205	219	8.4E-9	IPR020472

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K14963 (COMPASS component SWD3)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G02730.1	Transducin/WD40 repeat-like superfamily protein.
RefSeq	XP_022150234.1	COMPASS-like H3K4 histone methylase component WDR5B [Momordica charantia]
Swiss-Prot	Q9SY00	COMPASS-like H3K4 histone methylase component WDR5B OS=Arabidopsis thaliana OX=3702 GN=WDR5B PE=1 SV=1
TrEMBL	A0A6J1D9D7	COMPASS-like H3K4 histone methylase component WDR5B OS=Momordica charantia OX=3673 GN=LOC111018450 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg35306, jg39882
Aizoaceae	Mesembryanthemum crystallinum	2	gene_10152, gene_13572
Amaranthaceae	Atriplex hortensis	1	Ah037249
Amaranthaceae	Beta vulgaris	2	BVRB_4g074580, BVRB_5g119310
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg17396, Sbi_jg30720, Sbi_jg58546, Sbi_jg62046
Amaranthaceae	Salicornia europaea	2	Seu_jg28415, Seu_jg660
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00004978
Amaranthaceae	Suaeda glauca	4	Sgl24276, Sgl29451, Sgl55025, Sgl80526
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000009682, gene:ENSEOMG00000029317 ... gene:ENSEOMG00000040311
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.4AG0002860, CQ.Regalona.r1.4BG0003010
Anacardiaceae	Pistacia vera	2	pistato.v30056180, pistato.v30204350
Apiaceae	Apium graveolens	2	Ag10G00729, Ag4G01185
Arecaceae	Cocos nucifera	6	COCNU_05G000970, COCNU_06G014350, COCNU_06G019260 ... COCNU_08G011030, COCNU_14G012340, contig68953594G000010
Arecaceae	Phoenix dactylifera	5	gene-LOC103704252, gene-LOC103705709, gene-LOC103707622 ... gene-LOC120106995, gene-LOC120111129
Asparagaceae	Asparagus officinalis	1	AsparagusV1_03.719.V1.1
Asteraceae	Flaveria trinervia	2	Ftri10G26086, Ftri17G18327
Brassicaceae	Arabidopsis thaliana	2	AT3G49660.1, AT4G02730.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10010551m.g.v1.0, Thhalv10022457m.g.v1.0 ... Thhalv10023908m.g.v1.0, Thhalv10028762m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp5g12420.v2.2, Sp6g02690.v2.2
Brassicaceae	Brassica nigra	3	BniB05g055250.2N, BniB08g045430.2N, BniB08g063320.2N
Casuarinaceae	Casuarina glauca	1	Cgl06G0430
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno06g01100, gene.Cymno06g11640
Dunaliellaceae	Dunaliella salina	2	Dusal.0127s00025.v1.0, Dusal.2856s00001.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate02g09460, gene.Thate09g06630
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG03.1454, evm.TU.LG04.1083, evm.TU.LG10.567
Plantaginaceae	Plantago ovata	3	Pov_00008045, Pov_00024139, Pov_00033976
Plumbaginaceae	Limonium bicolor	3	Lb3G15846, Lb4G23840, Lb4G23844
Poaceae	Echinochloa crus-galli	7	AH01.761, AH02.2714, AH03.3413, BH01.903, BH03.3631 ... CH01.921, CH03.3832
Poaceae	Eleusine coracana subsp. coracana	3	gene-QOZ80_3BG0263400, gene-QOZ80_7AG0573580 ... gene-QOZ80_7BG0604880
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.2HG0135250.1, HORVU.MOREX.r3.4HG0338790.1
Poaceae	Lolium multiflorum	2	gene-QYE76_040191, gene-QYE76_040541
Poaceae	Oryza coarctata	3	Oco05G022250, Oco06G023140, Oco14G011270
Poaceae	Oryza sativa	2	LOC_Os03g51550.2, LOC_Os07g38430.1
Poaceae	Paspalum vaginatum	2	gene-BS78_01G097800, gene-BS78_02G322200
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0304498, Pt_Chr0304575
Poaceae	Sporobolus alterniflorus	7	Chr01G006520, Chr04G027630, Chr07G026550, Chr12G030960 ... Chr19G003920, Chr24G010700, Chr27G013340
Poaceae	Thinopyrum elongatum	2	Tel2E01G377000, Tel4E01G096100
Poaceae	Triticum dicoccoides	4	gene_TRIDC2AG025340, gene_TRIDC2BG029800 ... gene_TRIDC4AG040350, gene_TRIDC4BG008810
Poaceae	Triticum aestivum	6	TraesCS2A02G196900.1, TraesCS2B02G224500.1 ... TraesCS2D02G204900.1, TraesCS4A02G258000.1, TraesCS4B02G056500.1, TraesCS4D02G056800.1
Poaceae	Zea mays	5	Zm00001eb055840_P001, Zm00001eb270960_P001 ... Zm00001eb276600_P001, Zm00001eb325000_P001, Zm00001eb325010_P001
Poaceae	Zoysia japonica	4	nbis-gene-14920, nbis-gene-15990, nbis-gene-29410 ... nbis-gene-633
Poaceae	Zoysia macrostachya	3	Zma_g2906, Zma_g585, Zma_g6694
Portulacaceae	Portulaca oleracea	1	evm.TU.LG14.1612
Posidoniaceae	Posidonia oceanica	3	gene.Posoc01g21290, gene.Posoc03g05020, gene.Posoc03g26900
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_2_RagTag.305, evm.TU.Scaffold_6_RagTag.1740
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-17420, nbisL1-mrna-4886
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-11893, nbisL1-mrna-19088
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-12028, nbisL1-mrna-9833
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000009l.771, evm.TU.utg000011l.1059
Rhizophoraceae	Kandelia obovata	2	Maker00005699, Maker00008120
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-15415, nbisL1-mrna-2488
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-3346, nbisL1-mrna-6081
Salicaceae	Populus euphratica	5	populus_peu05212, populus_peu09234, populus_peu16798 ... populus_peu23727, populus_peu32714
Solanaceae	Lycium barbarum	2	gene-LOC132610932, gene-LOC132622208
Solanaceae	Solanum chilense	1	SOLCI004978600
Solanaceae	Solanum pennellii	2	gene-LOC107011469, gene-LOC107031421
Tamaricaceae	Reaumuria soongarica	3	STRG.10373_chr07_-, STRG.17356_chr09_-, gene_4734
Tamaricaceae	Tamarix chinensis	3	TC02G1598, TC02G2983, TC07G2682
Zosteraceae	Zostera marina	2	Zosma05g23000.v3.1, Zosma06g02780.v3.1